RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CNTFP26441 200 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 DGKEP52429 567 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 HSD11B2P80365 405 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 TBX2Q13207 712 aaPredicted RBP8.56□□□□□ -1.04
NUP54-215ENST00000514313 FBXO47Q5MNV8 452 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 TMPRSS9Q7Z410 1059 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 NAXEQ8NCW5 288 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 SPPL3Q8TCT6 385 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 PPM1MQ96MI6 270 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 RNPEPQ9H4A4 650 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 GGA3Q9NZ52 723 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 KIF17Q9P2E2 1029 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 CA14Q9ULX7 337 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 ZFR2Q9UPR6 939 aaKnown RBP8.56□□□□□ -1.04
NUP54-215ENST00000514313 CRYL1Q9Y2S2 319 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 A0A1B0GTW7 788 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 HMX3A6NHT5 357 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 ZNF185O15231 689 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 FOXS1O43638 330 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 KCNA2P16389 499 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 SLC5A2P31639 672 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 OCA2Q04671 838 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 TRIM71Q2Q1W2 868 aaKnown RBP8.55□□□□□ -1.04
NUP54-215ENST00000514313 SPTY2D1Q68D10 685 aaPredicted RBP8.55□□□□□ -1.04
NUP54-215ENST00000514313 MZT2AQ6P582 158 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 LRRTM4Q86VH4 590 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 FTSJ3Q8IY81 847 aaKnown RBP8.55□□□□□ -1.04
NUP54-215ENST00000514313 ANKRD35Q8N283 1001 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 DNAJB14Q8TBM8 379 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 PABPC3Q9H361 631 aaKnown RBP8.55□□□□□ -1.04
NUP54-215ENST00000514313 TP63Q9H3D4 680 aaPredicted RBP8.55□□□□□ -1.04
NUP54-215ENST00000514313 EPS8L2Q9H6S3 715 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 SAYSD1Q9NPB0 183 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 MAP3K20Q9NYL2 800 aaKnown RBP8.55□□□□□ -1.04
NUP54-215ENST00000514313 FEM1BQ9UK73 627 aa8.55□□□□□ -1.04
NUP54-215ENST00000514313 CAPN14A8MX76 684 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 J3KRW8 73 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 DNPH1O43598 174 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 RGS10O43665 173 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 FAM155BO75949 473 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 POLBP06746 335 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 ITGALP20701 1170 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 CST5P28325 142 aaPredicted RBP8.54□□□□□ -1.04
NUP54-215ENST00000514313 CNR2P34972 360 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 PRKAG1P54619 331 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 PRKAA2P54646 552 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 ALDH18A1P54886 795 aaKnown RBP8.54□□□□□ -1.04
NUP54-215ENST00000514313 GEMIN4P57678 1058 aaKnown RBP8.54□□□□□ -1.04
NUP54-215ENST00000514313 RNASE9P60153 205 aaKnown RBP8.54□□□□□ -1.04
NUP54-215ENST00000514313 GPS1Q13098 491 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 CNGB1Q14028 1251 aaPredicted RBP8.54□□□□□ -1.04
NUP54-215ENST00000514313 PTCHD3Q3KNS1 767 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 INTS11Q5TA45 600 aaKnown RBP8.54□□□□□ -1.04
NUP54-215ENST00000514313 WDR78Q5VTH9 848 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 NAIF1Q69YI7 327 aaPredicted RBP8.54□□□□□ -1.04
NUP54-215ENST00000514313 HTR3DQ70Z44 454 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 POLNQ7Z5Q5 900 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 POU5F2Q8N7G0 328 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 SIMC1Q8NDZ2 872 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 PPHLN1Q8NEY8 458 aaKnown RBP8.54□□□□□ -1.04
NUP54-215ENST00000514313 SCAMP5Q8TAC9 235 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 ASB12Q8WXK4 309 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 PPP2R3CQ969Q6 453 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 FAM227BQ96M60 508 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 MED15Q96RN5 788 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 PYM1Q9BRP8 204 aaKnown RBP8.54□□□□□ -1.04
NUP54-215ENST00000514313 RTKNQ9BST9 563 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 PRDM8Q9NQV8 689 aa8.54□□□□□ -1.04
NUP54-215ENST00000514313 NDRG4Q9ULP0 352 aaKnown RBP8.54□□□□□ -1.04
NUP54-215ENST00000514313 ADAMTS20P59510 1910 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 OR2W5A6NFC9 320 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 E7ENX8 843 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 CD3EAPO15446 510 aaKnown RBP8.53□□□□□ -1.04
NUP54-215ENST00000514313 EPB41L2O43491 1005 aaKnown RBP8.53□□□□□ -1.04
NUP54-215ENST00000514313 SOAT2O75908 522 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 RHOBTB3O94955 611 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 KLRK1P26718 216 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 ADD2P35612 726 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 POLE2P56282 527 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 AP2B1P63010 937 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 TAP2Q03519 686 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 FAM110CQ1W6H9 321 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 ADCK5Q3MIX3 580 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 ABLIM2Q6H8Q1 611 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 Q6ZRM9 215 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 C2CD5Q86YS7 1000 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 RASGRP3Q8IV61 690 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 SLC44A2Q8IWA5 706 aaPredicted RBP8.53□□□□□ -1.04
NUP54-215ENST00000514313 CCDC117Q8IWD4 279 aaPredicted RBP8.53□□□□□ -1.04
NUP54-215ENST00000514313 SPARTQ8N0X7 666 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 Q8NA96 180 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 CPT1CQ8TCG5 803 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 RBM15Q96T37 977 aaKnown RBP eCLIP8.53□□□□□ -1.04
NUP54-215ENST00000514313 MNTQ99583 582 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 DDX23Q9BUQ8 820 aaKnown RBP8.53□□□□□ -1.04
NUP54-215ENST00000514313 PTDSS2Q9BVG9 487 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 HELLSQ9NRZ9 838 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 TMOD4Q9NZQ9 345 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 VPS51Q9UID3 782 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 RNF114Q9Y508 228 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms