RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SNX27Q96L92 541 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 KREMEN1Q96MU8 473 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 MED10Q9BTT4 135 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 NFKBIZQ9BYH8 718 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 TSPYL2Q9H2G4 693 aaPredicted RBP9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 SNX25Q9H3E2 840 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 NOP53Q9NZM5 478 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 DLGAP2Q9P1A6 1054 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 UBQLN1Q9UMX0 589 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 PFDN1O60925 122 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 TADA2AO75478 443 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 FSBPO95073 299 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 ATP6V1G2O95670 118 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 PROZP22891 400 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 MNX1P50219 401 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 CDK7P50613 346 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 PDE6CP51160 858 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 POU5F1BQ06416 359 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 MGAT3Q09327 533 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 TCTN1Q2MV58 587 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 SGSM1Q2NKQ1 1148 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 TRIM74Q86UV6 250 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 TRIM73Q86UV7 250 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 CCDC50Q8IVM0 306 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 RBBP8NLQ8NC74 664 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 CCDC197Q8NCU1 140 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 UBA3Q8TBC4 463 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 NAA15Q9BXJ9 866 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 TSGA10Q9BZW7 698 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 GANQ9H2C0 597 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 FAM114A2Q9NRY5 505 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 HMGXB4Q9UGU5 601 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 STYXL1Q9Y6J8 313 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 CITO14578 2027 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 ENPP3O14638 875 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 FAM107AO95990 144 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 PBX1P40424 430 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 KIF11P52732 1056 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 ATP11AP98196 1134 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 CUL2Q13617 745 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 ZNF365Q70YC5 407 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 ERICH1Q86X53 443 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 TMEM199Q8N511 208 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 C12orf29Q8N999 325 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 CPA5Q8WXQ8 436 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 PGLYRP2Q96PD5 576 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 ASB7Q9H672 318 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 CISHQ9NSE2 258 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 SIX4Q9UIU6 781 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 A0A0U1RQF3 1178 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 F8VZ95 297 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 PODXLO00592 558 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 PTGESO14684 152 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 MMEP08473 750 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 GNA15P30679 374 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 GTF2H1P32780 548 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 SOX5P35711 763 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 RGS7P49802 495 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 MARSP56192 900 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 PTPN11Q06124 597 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 ADCY2Q08462 1091 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 BTG3Q14201 252 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 KIAA1841Q6NSI8 718 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 NIF3L1Q9GZT8 377 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 VIPAS39Q9H9C1 493 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 SIX2Q9NPC8 291 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 ARHGAP20Q9P2F6 1191 aa9.14□□□□□ -0.95
LIMCH1-209ENST00000509277 SCN5AQ14524 2016 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 CDH23Q9H251 3354 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 GOLGA8SH3BPF8 625 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 CYB561D2O14569 222 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 FAM189A1O60320 539 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 ITGB1P05556 798 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 P4HA1P13674 534 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 ATF7P17544 494 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 DEUP1Q05D60 604 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 TBX2Q13207 712 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 MUM1Q2TAK8 710 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 ANKRD20A8PQ5CZ79 823 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 NOMO2Q5JPE7 1267 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 WSCD1Q658N2 575 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 IFNLR1Q8IU57 520 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 TEKT4Q8WW24 435 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 LINC01599Q8WXQ3 324 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 ABHD8Q96I13 439 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 ATP6V1G3Q96LB4 118 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 CRISPLD2Q9H0B8 497 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 DDX47Q9H0S4 455 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 METTL5Q9NRN9 209 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 KCND1Q9NSA2 647 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 OR4Q2P0C623 313 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 AARSP49588 968 aaKnown RBP eCLIP9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 TAF6P49848 677 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 PAPOLAP51003 745 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 LLGL2Q6P1M3 1020 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 TRIM58Q8NG06 486 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 FBF1Q8TES7 1133 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 BAP1Q92560 729 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 OSBPL9Q96SU4 736 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms