RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 C2orf81A6NN90 581 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 APOL1O14791 398 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 HSPA8P11142 646 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 RENBPP51606 427 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 RASGRP3Q8IV61 690 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 ALLCQ8N6M5 410 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 FAM133AQ8N9E0 248 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 SMARCD1Q96GM5 515 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 PRDM16Q9HAZ2 1276 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 ATP13A1Q9HD20 1204 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 PTPRJQ12913 1337 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 PSMD3O43242 534 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 C8AP07357 584 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 PDGFRAP16234 1089 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 SDHBP21912 280 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 CDH6P55285 790 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 POU5F1BQ06416 359 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 SDCCAG3Q96C92 435 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 TUBGCP2Q9BSJ2 902 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 DNMT3LQ9UJW3 386 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 HYOU1Q9Y4L1 999 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 UNC13BO14795 1591 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 PALMO75781 387 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 SLC2A4P14672 509 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 RALGDSQ12967 914 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 TARBP2Q15633 366 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 DCLRE1AQ6PJP8 1040 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 BACH2Q9BYV9 841 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 NUF2Q9BZD4 464 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 SYTL2Q9HCH5 934 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 DMAP1Q9NPF5 467 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 DNAI1Q9UI46 699 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 RASGRF2O14827 1237 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 PER1O15534 1290 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 TJP3O95049 919 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 ACAT1P24752 427 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 ATP1A2P50993 1020 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 TTLL9Q3SXZ7 439 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 TMEM31Q5JXX7 168 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 C10orf76Q5T2E6 689 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 GKAP1Q5VSY0 366 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 MTHFD1LQ6UB35 978 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 UNC13DQ70J99 1090 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 FBXO18Q8NFZ0 1043 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 E2F7Q96AV8 911 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 DYRK1BQ9Y463 629 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 MRFAP1Q9Y605 127 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 FHOD1Q9Y613 1164 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 LAMC1P11047 1609 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 PEX12O00623 359 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 ATP9BO43861 1147 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 TIPRLO75663 272 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 SKILP12757 684 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 CSF2RAP15509 400 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 EIF4BP23588 611 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 PEX5P50542 639 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 KRBA2Q6ZNG9 492 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 ZSCAN30Q86W11 494 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 DSELQ8IZU8 1212 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 METTL21AQ8WXB1 218 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 MAP4K1Q92918 833 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 PPP1R2P1Q96PQ5 205 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 FANCFQ9NPI8 374 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 CFAP97Q9P2B7 532 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 PCDHGA4Q9Y5G9 962 aa9.61□□□□□ -0.87
LIMCH1-202ENST00000381753 GSAPA4D1B5 854 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 NEMP2A6NFY4 417 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 GNGT2O14610 69 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 INPPL1O15357 1258 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 FBXO21O94952 628 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 IFNA16P05015 189 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 KRT7P08729 469 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 EPHB2P29323 1055 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 TIE1P35590 1138 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 SCNN1AP37088 669 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 NAA35Q5VZE5 725 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 OR10G6Q8NH81 332 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 TBC1D32Q96NH3 1257 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 AGO4Q9HCK5 861 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 KCND2Q9NZV8 630 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 BCORL1Q5H9F3 1711 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 LRRIQ3A6PVS8 624 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 TTI1O43156 1089 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 NUDT14O95848 222 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 MCF2P10911 925 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 CASRP41180 1078 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 RAET1GQ6H3X3 334 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 PTCRAQ6ISU1 281 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 TRIM72Q6ZMU5 477 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 TSHZ1Q6ZSZ6 1077 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 TMTC1Q8IUR5 882 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 POF1BQ8WVV4 589 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 BFARQ9NZS9 450 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 ANAPC7Q9UJX3 599 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 SUFUQ9UMX1 484 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 CLIC4Q9Y696 253 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 A0A0G2JLL6 359 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 GOLGA8QA0A0J9YX86 632 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 GOLGA8OA6NCC3 632 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 GOLGA8NF8WBI6 632 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms