RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 SNX25Q9H3E2 840 aa18.96■□□□□ 0.63
HDDC3-201ENST00000330334 GTSE1Q9NYZ3 720 aa18.96■□□□□ 0.63
HDDC3-201ENST00000330334 EHD2Q9NZN4 543 aa18.96■□□□□ 0.63
HDDC3-201ENST00000330334 SPTBN4Q9H254 2564 aa18.96■□□□□ 0.63
HDDC3-201ENST00000330334 NUP210Q8TEM1 1887 aaPredicted RBP18.96■□□□□ 0.63
HDDC3-201ENST00000330334 FANCMQ8IYD8 2048 aa18.96■□□□□ 0.63
HDDC3-201ENST00000330334 OTOGLQ3ZCN5 2332 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 LILRB5O75023 590 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 TADA3O75528 432 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 KIF20AO95235 890 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 TDGF1P13385 188 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 PFKLP17858 780 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 CCR3P51677 355 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 MYL6P60660 151 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 PSMC1P62191 440 aaKnown RBP18.95■□□□□ 0.62
HDDC3-201ENST00000330334 CCDC142Q17RM4 750 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 SCN4BQ8IWT1 228 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 SYNPOQ8N3V7 929 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 SPEM1Q8N4L4 309 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 SUMF1Q8NBK3 374 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 MYLPFQ96A32 169 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 PCED1BQ96HM7 432 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 SMG9Q9H0W8 520 aaKnown RBP18.95■□□□□ 0.62
HDDC3-201ENST00000330334 GKN1Q9NS71 199 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 CCL26Q9Y258 94 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 TICRRQ7Z2Z1 1910 aa18.95■□□□□ 0.62
HDDC3-201ENST00000330334 IKBKBO14920 756 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 TRIM66O15016 1216 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 PHACTR2O75167 634 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 RHOBTB3O94955 611 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 PAPSS2O95340 614 aaPredicted RBP18.94■□□□□ 0.62
HDDC3-201ENST00000330334 C4BPAP04003 597 aaKnown RBP18.94■□□□□ 0.62
HDDC3-201ENST00000330334 RPN1P04843 607 aaKnown RBP18.94■□□□□ 0.62
HDDC3-201ENST00000330334 PTPN1P18031 435 aaKnown RBP18.94■□□□□ 0.62
HDDC3-201ENST00000330334 BDNFP23560 247 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 GRIK1P39086 918 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 PPP3CCP48454 512 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 NDUFA8P51970 172 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 NOP14P78316 857 aaKnown RBP18.94■□□□□ 0.62
HDDC3-201ENST00000330334 FAM160A1Q05DH4 1040 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 TXNDC11Q6PKC3 985 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 OR6B3Q8NGW1 331 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 PLEKHO2Q8TD55 490 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 TMC2Q8TDI7 906 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 CCDC47Q96A33 483 aaKnown RBP18.94■□□□□ 0.62
HDDC3-201ENST00000330334 C8orf48Q96LL4 319 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 TTLL2Q9BWV7 592 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 TRAF3IP3Q9Y228 551 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 PATJQ8NI35 1801 aa18.94■□□□□ 0.62
HDDC3-201ENST00000330334 TRAV19A0A0A6YYK7 116 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 LRRIQ3A6PVS8 624 aaPredicted RBP18.93■□□□□ 0.62
HDDC3-201ENST00000330334 MAPK13O15264 365 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 NR3C1P04150 777 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 USP17L7P0C7H9 530 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 TCF3P15923 654 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 CXCL12P48061 93 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 SOX9P48436 509 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 CASP4P49662 377 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 PDE6CP51160 858 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 AMPD2Q01433 879 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 CYP27A1Q02318 531 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 TNK2Q07912 1038 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 RUNX3Q13761 415 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 CCINQ13939 588 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 PDGFRLQ15198 375 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 NFIL3Q16649 462 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 TDRD10Q5VZ19 366 aaKnown RBP18.93■□□□□ 0.62
HDDC3-201ENST00000330334 DENND5BQ6ZUT9 1274 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 STKLD1Q8NE28 680 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 RUBCNQ92622 972 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 GCNT4Q9P109 453 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 NME7Q9Y5B8 376 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 GPR179Q6PRD1 2367 aa18.93■□□□□ 0.62
HDDC3-201ENST00000330334 ANXA13P27216 316 aa18.92■□□□□ 0.62
HDDC3-201ENST00000330334 ENPEPQ07075 957 aa18.92■□□□□ 0.62
HDDC3-201ENST00000330334 DPYDQ12882 1025 aa18.92■□□□□ 0.62
HDDC3-201ENST00000330334 NCOA4Q13772 614 aa18.92■□□□□ 0.62
HDDC3-201ENST00000330334 GAS6Q14393 721 aa18.92■□□□□ 0.62
HDDC3-201ENST00000330334 CC2D1AQ6P1N0 951 aaPredicted RBP18.92■□□□□ 0.62
HDDC3-201ENST00000330334 KIAA1958Q8N8K9 716 aa18.92■□□□□ 0.62
HDDC3-201ENST00000330334 TAF4BQ92750 862 aa18.92■□□□□ 0.62
HDDC3-201ENST00000330334 CHAMP1Q96JM3 812 aa18.92■□□□□ 0.62
HDDC3-201ENST00000330334 ELOVL4Q9GZR5 314 aa18.92■□□□□ 0.62
HDDC3-201ENST00000330334 EPC1Q9H2F5 836 aa18.92■□□□□ 0.62
HDDC3-201ENST00000330334 HPS4Q9NQG7 708 aa18.92■□□□□ 0.62
HDDC3-201ENST00000330334 NXF1Q9UBU9 619 aaKnown RBP18.92■□□□□ 0.62
HDDC3-201ENST00000330334 FRMD4BQ9Y2L6 1034 aa18.92■□□□□ 0.62
HDDC3-201ENST00000330334 DENND4CQ5VZ89 1909 aa18.92■□□□□ 0.62
HDDC3-201ENST00000330334 A8MXQ7 604 aa18.91■□□□□ 0.62
HDDC3-201ENST00000330334 TRDMT1O14717 391 aaKnown RBP18.91■□□□□ 0.62
HDDC3-201ENST00000330334 CALUO43852 315 aaPredicted RBP18.91■□□□□ 0.62
HDDC3-201ENST00000330334 BIRC3Q13489 604 aa18.91■□□□□ 0.62
HDDC3-201ENST00000330334 KCNB1Q14721 858 aa18.91■□□□□ 0.62
HDDC3-201ENST00000330334 SGSM1Q2NKQ1 1148 aa18.91■□□□□ 0.62
HDDC3-201ENST00000330334 ZACNQ401N2 412 aa18.91■□□□□ 0.62
HDDC3-201ENST00000330334 ZNF667Q5HYK9 610 aa18.91■□□□□ 0.62
HDDC3-201ENST00000330334 MDH1BQ5I0G3 518 aa18.91■□□□□ 0.62
HDDC3-201ENST00000330334 WDR44Q5JSH3 913 aa18.91■□□□□ 0.62
HDDC3-201ENST00000330334 TSSK4Q6SA08 328 aa18.91■□□□□ 0.62
HDDC3-201ENST00000330334 KRBA2Q6ZNG9 492 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms