RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 SIGLEC16A6NMB1 481 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 KRT3P12035 628 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 AARSP49588 968 aaKnown RBP eCLIP17.78■□□□□ 0.44
LDLR-206ENST00000557958 CDK7P50613 346 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 RPL7AP62424 266 aaKnown RBP17.78■□□□□ 0.44
LDLR-206ENST00000557958 ORC1Q13415 861 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 LPIN1Q14693 890 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 SV2CQ496J9 727 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 PPP1R15BQ5SWA1 713 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 AADACL2Q6P093 401 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 CPNE8Q86YQ8 564 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 CCDC50Q8IVM0 306 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 TMEM130Q8N3G9 435 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 PRELID2Q8N945 189 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 SEC14L1Q92503 715 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 C18orf25Q96B23 403 aaPredicted RBP17.78■□□□□ 0.44
LDLR-206ENST00000557958 GDAP1L1Q96MZ0 367 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 RUFY1Q96T51 708 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 PLEKHA4Q9H4M7 779 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 USTQ9Y2C2 406 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 GOLGA6BA6NDN3 693 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 BHMG1C9JSJ3 638 aaPredicted RBP17.77■□□□□ 0.43
LDLR-206ENST00000557958 OAS2P29728 719 aaKnown RBP17.77■□□□□ 0.43
LDLR-206ENST00000557958 GABRB2P47870 512 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 TAF6P49848 677 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 PDCLQ13371 301 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 CYP4A22Q5TCH4 519 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 ALS2CLQ60I27 953 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 CCDC137Q6PK04 289 aaKnown RBP17.77■□□□□ 0.43
LDLR-206ENST00000557958 SLC39A5Q6ZMH5 540 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 FAM126BQ8IXS8 530 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 MREGQ8N565 214 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 GOLGA6L1Q8N7Z2 621 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 ARMC5Q96C12 935 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 CRISPLD2Q9H0B8 497 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 RNF39Q9H2S5 420 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 ERVK-5Q9HDB9 667 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 SLC38A7Q9NVC3 462 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 DDX56Q9NY93 547 aaKnown RBP17.77■□□□□ 0.43
LDLR-206ENST00000557958 HESX1Q9UBX0 185 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 FEZ2Q9UHY8 353 aaPredicted RBP17.77■□□□□ 0.43
LDLR-206ENST00000557958 NR2E1Q9Y466 385 aa17.77■□□□□ 0.43
LDLR-206ENST00000557958 PIRO00625 290 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 HSF2BPO75031 334 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 SETSIPP0DME0 302 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 ZFYVE27Q5T4F4 411 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 DPH6Q7L8W6 267 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 CCDC105Q8IYK2 499 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 RCOR2Q8IZ40 523 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 RNF169Q8NCN4 708 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 SMG8Q8ND04 991 aaKnown RBP17.76■□□□□ 0.43
LDLR-206ENST00000557958 FAM71BQ8TC56 605 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 LRRC45Q96CN5 670 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 CPXM1Q96SM3 734 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 ERP44Q9BS26 406 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 TMEM106CQ9BVX2 250 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 CXCL16Q9H2A7 254 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 LRRC19Q9H756 370 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 GDAP2Q9NXN4 497 aa17.76■□□□□ 0.43
LDLR-206ENST00000557958 KPNA7A9QM74 516 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 GOLGA8SH3BPF8 625 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 CAPN15O75808 1086 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 GPD2P43304 727 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 MNX1P50219 401 aaPredicted RBP17.75■□□□□ 0.43
LDLR-206ENST00000557958 DRG2P55039 364 aaKnown RBP17.75■□□□□ 0.43
LDLR-206ENST00000557958 ACAP1Q15027 740 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 JAMLQ86YT9 394 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 GRK7Q8WTQ7 553 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 TSPAN16Q9UKR8 245 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 ATP11BQ9Y2G3 1177 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 RARAP10276 462 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 DESP17661 470 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 PSMA2P25787 234 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 COILP38432 576 aaPredicted RBP17.75■□□□□ 0.43
LDLR-206ENST00000557958 GJA8P48165 433 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 COPS2P61201 443 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 BFSP2Q13515 415 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 HADHQ16836 314 aaKnown RBP17.75■□□□□ 0.43
LDLR-206ENST00000557958 TRIM60Q495X7 471 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 FAM26DQ5JW98 314 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 POLNQ7Z5Q5 900 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 XYLT1Q86Y38 959 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 APPL2Q8NEU8 664 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 OR6B3Q8NGW1 331 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 MRPL45Q9BRJ2 306 aaKnown RBP17.75■□□□□ 0.43
LDLR-206ENST00000557958 FAM129AQ9BZQ8 928 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 SNX25Q9H3E2 840 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 ST7Q9NRC1 585 aa17.75■□□□□ 0.43
LDLR-206ENST00000557958 A8MXQ7 604 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 DCDC2CA8MYV0 355 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 PPEF2O14830 753 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 DAPK3O43293 454 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 HUS1O60921 280 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 GJB6O95452 261 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 ECEL1O95672 775 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 GJC1P36383 396 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 RAB27AP51159 221 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 TAS2R40P59535 323 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 GOLGA7BQ2TAP0 167 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 SYDE1Q6ZW31 735 aaPredicted RBP17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms