RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W ATP5P09457 212 aa-0.22□□□□□ -2.44
RPF1YHR088W SLM6P38343 150 aa-0.22□□□□□ -2.44
RPF1YHR088W RPS29BP41058 56 aaKnown RBP-0.22□□□□□ -2.44
RPF1YHR088W DIE2P50076 525 aa-0.22□□□□□ -2.44
RPF1YHR088W ORM1P53224 222 aa-0.22□□□□□ -2.44
RPF1YHR088W PLP1Q04004 230 aa-0.22□□□□□ -2.44
RPF1YHR088W YPR153WQ06537 140 aa-0.22□□□□□ -2.44
RPF1YHR088W IRC19Q07843 230 aa-0.22□□□□□ -2.44
RPF1YHR088W COA6Q3E846 104 aa-0.22□□□□□ -2.44
RPF1YHR088W TAO3P40468 2376 aa-0.22□□□□□ -2.44
RPF1YHR088W CMD1P06787 147 aaKnown RBP-0.23□□□□□ -2.45
RPF1YHR088W YGL101WP53144 215 aa-0.23□□□□□ -2.45
RPF1YHR088W GRX3Q03835 250 aa-0.23□□□□□ -2.45
RPF1YHR088W GPI11Q06636 219 aa-0.23□□□□□ -2.45
RPF1YHR088W HUG1Q6Q5K6 68 aa-0.23□□□□□ -2.45
RPF1YHR088W YGL014C-AP0C5N1 53 aa-0.24□□□□□ -2.45
RPF1YHR088W RAD51P25454 400 aa-0.24□□□□□ -2.45
RPF1YHR088W FIT3Q08907 204 aa-0.24□□□□□ -2.45
RPF1YHR088W YLR050CQ12155 161 aaKnown RBP-0.24□□□□□ -2.45
RPF1YHR088W BLM10P43583 2143 aa-0.25□□□□□ -2.45
RPF1YHR088W URA2P07259 2214 aaKnown RBP-0.25□□□□□ -2.45
RPF1YHR088W GIM3P53900 129 aa-0.25□□□□□ -2.45
RPF1YHR088W YMR122CQ03879 124 aa-0.25□□□□□ -2.45
RPF1YHR088W RFU1Q08003 200 aa-0.25□□□□□ -2.45
RPF1YHR088W SNF2P22082 1703 aa-0.26□□□□□ -2.45
RPF1YHR088W UBI4P0CG63 381 aaKnown RBP-0.26□□□□□ -2.45
RPF1YHR088W NHP6AP11632 93 aaKnown RBP-0.26□□□□□ -2.45
RPF1YHR088W SRL3P36167 246 aa-0.26□□□□□ -2.45
RPF1YHR088W FES1P38260 290 aa-0.26□□□□□ -2.45
RPF1YHR088W YJL218WP40892 196 aaKnown RBP-0.26□□□□□ -2.45
RPF1YHR088W FIP1P45976 327 aa-0.26□□□□□ -2.45
RPF1YHR088W YNL140CP53910 189 aa-0.26□□□□□ -2.45
RPF1YHR088W TMA20P89886 181 aaPredicted RBP-0.26□□□□□ -2.45
RPF1YHR088W YPR202WQ08993 238 aa-0.26□□□□□ -2.45
RPF1YHR088W MHF1Q3E835 90 aa-0.26□□□□□ -2.45
RPF1YHR088W KTI11Q3E840 82 aa-0.26□□□□□ -2.45
RPF1YHR088W RPL30P14120 105 aaKnown RBP-0.27□□□□□ -2.45
RPF1YHR088W PEX34P25584 144 aa-0.27□□□□□ -2.45
RPF1YHR088W CDC39P25655 2108 aaKnown RBP-0.27□□□□□ -2.45
RPF1YHR088W SRP21P32342 167 aa-0.27□□□□□ -2.45
RPF1YHR088W LST8P41318 303 aa-0.27□□□□□ -2.45
RPF1YHR088W EST3Q03096 181 aa-0.27□□□□□ -2.45
RPF1YHR088W LAA1P39526 2014 aa-0.27□□□□□ -2.45
RPF1YHR088W IPI1P38803 334 aaPredicted RBP-0.28□□□□□ -2.45
RPF1YHR088W YER121WP40076 114 aa-0.28□□□□□ -2.45
RPF1YHR088W LSM3P57743 89 aaKnown RBP-0.28□□□□□ -2.45
RPF1YHR088W COX5BP00425 151 aa-0.29□□□□□ -2.46
RPF1YHR088W GPI2P46961 280 aa-0.29□□□□□ -2.46
RPF1YHR088W VMA10P48836 114 aaKnown RBP-0.29□□□□□ -2.46
RPF1YHR088W COA4Q05809 96 aa-0.29□□□□□ -2.46
RPF1YHR088W RPL35AP0CX84 120 aaKnown RBP-0.3□□□□□ -2.46
RPF1YHR088W RPL35BP0CX85 120 aaKnown RBP-0.3□□□□□ -2.46
RPF1YHR088W YDR476CQ03362 224 aa-0.3□□□□□ -2.46
RPF1YHR088W RRT7Q07829 113 aa-0.3□□□□□ -2.46
RPF1YHR088W HUT1Q12520 339 aa-0.3□□□□□ -2.46
RPF1YHR088W YHR213WP0CI67 198 aa-0.31□□□□□ -2.46
RPF1YHR088W NMT1P14743 455 aa-0.31□□□□□ -2.46
RPF1YHR088W MRPL24P36525 258 aaPredicted RBP-0.31□□□□□ -2.46
RPF1YHR088W EGD2P38879 174 aaKnown RBP-0.31□□□□□ -2.46
RPF1YHR088W DLS1P40366 167 aa-0.31□□□□□ -2.46
RPF1YHR088W YLR194CQ05777 254 aa-0.31□□□□□ -2.46
RPF1YHR088W RDI1Q12434 202 aa-0.31□□□□□ -2.46
RPF1YHR088W DDR48P18899 430 aaKnown RBP-0.32□□□□□ -2.46
RPF1YHR088W YBR013CP38215 129 aa-0.32□□□□□ -2.46
RPF1YHR088W AIM4P38305 123 aaPredicted RBP-0.32□□□□□ -2.46
RPF1YHR088W APQ12P40532 138 aa-0.32□□□□□ -2.46
RPF1YHR088W YNL019CP53975 284 aa-0.32□□□□□ -2.46
RPF1YHR088W ATP19P81451 68 aa-0.32□□□□□ -2.46
RPF1YHR088W MAK3Q03503 176 aa-0.32□□□□□ -2.46
RPF1YHR088W GSC2P40989 1895 aa-0.33□□□□□ -2.46
RPF1YHR088W RPS28BP0C0X0 67 aaKnown RBP-0.33□□□□□ -2.46
RPF1YHR088W RPL40AP0CH08 128 aaKnown RBP-0.33□□□□□ -2.46
RPF1YHR088W RPL40BP0CH09 128 aaKnown RBP-0.33□□□□□ -2.46
RPF1YHR088W FYV5P25585 152 aa-0.33□□□□□ -2.46
RPF1YHR088W AUA1P32450 94 aa-0.33□□□□□ -2.46
RPF1YHR088W YER181CP40097 107 aa-0.33□□□□□ -2.46
RPF1YHR088W EMC4P53073 190 aa-0.33□□□□□ -2.46
RPF1YHR088W RPS28AQ3E7X9 67 aaPredicted RBP-0.33□□□□□ -2.46
RPF1YHR088W SCS22Q6Q595 175 aa-0.33□□□□□ -2.46
RPF1YHR088W BNI1P41832 1953 aa-0.34□□□□□ -2.46
RPF1YHR088W MIC27P50945 234 aa-0.34□□□□□ -2.46
RPF1YHR088W GIM5Q04493 163 aa-0.34□□□□□ -2.46
RPF1YHR088W SOM1Q05676 74 aa-0.34□□□□□ -2.46
RPF1YHR088W ATG38Q05789 226 aaKnown RBP-0.34□□□□□ -2.46
RPF1YHR088W YLR053CQ12026 108 aa-0.34□□□□□ -2.46
RPF1YHR088W DDP1Q99321 188 aaKnown RBP-0.34□□□□□ -2.46
RPF1YHR088W SAC3P46674 1301 aa-0.35□□□□□ -2.46
RPF1YHR088W YSF3P0C074 85 aaPredicted RBP-0.35□□□□□ -2.47
RPF1YHR088W ANB1P19211 157 aa-0.35□□□□□ -2.47
RPF1YHR088W RPS1BP23248 255 aaKnown RBP-0.35□□□□□ -2.47
RPF1YHR088W BUB2P26448 306 aaPredicted RBP-0.35□□□□□ -2.47
RPF1YHR088W YCL001W-AP87012 153 aa-0.35□□□□□ -2.47
RPF1YHR088W PHB1P40961 287 aa-0.36□□□□□ -2.47
RPF1YHR088W BRP1P53194 125 aa-0.36□□□□□ -2.47
RPF1YHR088W RTC6O14464 93 aa-0.37□□□□□ -2.47
RPF1YHR088W PBI2P0CT04 75 aaKnown RBP-0.37□□□□□ -2.47
RPF1YHR088W FUN14P18411 198 aa-0.37□□□□□ -2.47
RPF1YHR088W RME1P32338 300 aaKnown RBP-0.37□□□□□ -2.47
RPF1YHR088W SFT2P38166 215 aa-0.37□□□□□ -2.47
RPF1YHR088W YLR296WQ05898 108 aa-0.37□□□□□ -2.47
Retrieved 100 of 5,963 RNA–protein pairs in 95 ms