RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 AFMP43652 599 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 RPL10AP62906 217 aaKnown RBP20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 ASCL5Q7RTU5 278 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 LIMS2Q7Z4I7 341 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 ADGRF2Q8IZF7 708 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 SPRYD3Q8NCJ5 442 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 OR5B17Q8NGF7 314 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 CSGALNACT1Q8TDX6 532 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 FNBP1Q96RU3 617 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 IER2Q9BTL4 223 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 MKNK1Q9BUB5 465 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 BLZF1Q9H2G9 400 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 IL21Q9HBE4 155 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 SPATA6Q9NWH7 488 aaPredicted RBP20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 MYO15AQ9UKN7 3530 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 EP300Q09472 2414 aaPredicted RBP20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 VPS13AQ96RL7 3174 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 DENND4CQ5VZ89 1909 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 LRRN2O75325 713 aa20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 CMA1P23946 247 aa20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 DDX6P26196 483 aaKnown RBP eCLIP20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 PSMD2Q13200 908 aa20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 PSMD6Q15008 389 aa20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 KNOP1Q1ED39 458 aaKnown RBP20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 SOWAHAQ2M3V2 549 aa20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 ARHGAP29Q52LW3 1261 aa20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 GIPC2Q8TF65 315 aa20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 FUBP3Q96I24 572 aaKnown RBP eCLIP20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 C8orf33Q9H7E9 229 aaPredicted RBP20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 TMLHEQ9NVH6 421 aa20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 UXTQ9UBK9 157 aaPredicted RBP20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 TICRRQ7Z2Z1 1910 aa20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 GVINP1Q7Z2Y8 2422 aa20.46■□□□□ 0.87
CCDC28A-203ENST00000617445 ARNTLO00327 626 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 TNNI1P19237 187 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 KRT85P78386 507 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 PLCB2Q00722 1185 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 CYP24A1Q07973 514 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 CUL4BQ13620 913 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 MAPRE1Q15691 268 aaKnown RBP20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 CFAP221Q4G0U5 840 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 STXBP5Q5T5C0 1151 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 LMBRD2Q68DH5 695 aaPredicted RBP20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 MAMSTRQ6ZN01 415 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 TRAPPC11Q7Z392 1133 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 NELFCDQ8IXH7 590 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 FAM3CQ92520 227 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 PKMYT1Q99640 499 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 PI4K2AQ9BTU6 479 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 SLC39A2Q9NP94 309 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 SERTAD1Q9UHV2 236 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 ATP6V1DQ9Y5K8 247 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 PIAS3Q9Y6X2 628 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 PTPRJQ12913 1337 aa20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 ZNF638Q14966 1978 aaKnown RBP20.45■□□□□ 0.86
CCDC28A-203ENST00000617445 PATJQ8NI35 1801 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 SHISA7A6NL88 538 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 CLIC2O15247 247 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 DLATP10515 647 aaKnown RBP20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 HMGA1P17096 107 aaKnown RBP20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 CYP2J2P51589 502 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 FZD5Q13467 585 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 FAM171BQ6P995 826 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 C4orf50Q6ZRC1 276 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 SPATA2LQ8IUW3 424 aaPredicted RBP20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 ZNF687Q8N1G0 1237 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 CELF5Q8N6W0 485 aaKnown RBP20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 RDH13Q8NBN7 331 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 TMEM174Q8WUU8 243 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 RSPRY1Q96DX4 576 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 PAGE5Q96GU1 130 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 SPATA32Q96LK8 384 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 CEP295NLQ96MC4 621 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 CGRRF1Q99675 332 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 THG1LQ9NWX6 298 aaKnown RBP20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 GTF3C4Q9UKN8 822 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 CDH9Q9ULB4 789 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 COL4A2P08572 1712 aa20.44■□□□□ 0.86
CCDC28A-203ENST00000617445 ACTN4O43707 911 aaKnown RBP20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 LMNAP02545 664 aaKnown RBP20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 F11P03951 625 aa20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 WARSP23381 471 aaKnown RBP20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 ACAT1P24752 427 aaKnown RBP20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 CASP1P29466 404 aa20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 MAGEA11P43364 429 aa20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 NLRP12P59046 1061 aa20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 OSTM1Q86WC4 334 aa20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 MAML2Q8IZL2 1156 aaPredicted RBP20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 CMTM8Q8IZV2 173 aa20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 BPIFB1Q8TDL5 484 aa20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 MRPS31Q92665 395 aaKnown RBP20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 TRMT2BQ96GJ1 504 aaKnown RBP20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 FAM84AQ96KN4 292 aa20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 MYRFLQ96LU7 910 aa20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 SLC46A2Q9BY10 475 aa20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 EXOC1Q9NV70 894 aa20.43■□□□□ 0.86
CCDC28A-203ENST00000617445 COL4A3Q01955 1670 aa20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 EXOC3O60645 756 aa20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 STAU1O95793 577 aaKnown RBP20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 CYP2F1P24903 491 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms