RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	DTNB	O60941	627 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	F11	P03951	625 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	HAPLN1	P10915	354 aa	Predicted RBP	13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	ARSA	P15289	507 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	FAM160A1	Q05DH4	1040 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	SPAG1	Q07617	926 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	RABEP1	Q15276	862 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	ZNF174	Q15697	407 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	ME3	Q16798	604 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	KRT79	Q5XKE5	535 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	LMBRD2	Q68DH5	695 aa	Predicted RBP	13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	TMEM150A	Q86TG1	271 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	MON1A	Q86VX9	555 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	METTL23	Q86XA0	190 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	THEM5	Q8N1Q8	247 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	NECAB1	Q8N987	351 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	OSCP1	Q8WVF1	389 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	BICD1	Q96G01	975 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	NUSAP1	Q9BXS6	441 aa	Known RBP	13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	TMEM206	Q9H813	350 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	ECT2	Q9H8V3	914 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	FBRSL1	Q9HCM7	1045 aa	Known RBP	13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	NOL7	Q9UMY1	257 aa	Known RBP	13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	DERA	Q9Y315	318 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	ITPR1	Q14643	2758 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	DENND4C	Q5VZ89	1909 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	DMXL2	Q8TDJ6	3036 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	AKAP13	Q12802	2813 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	IGF2R	P11717	2491 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	LACTBL1	A8MY62	500 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	LAD1	O00515	517 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	OGT	O15294	1046 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	FAM189A1	O60320	539 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	TOP3B	O95985	862 aa	Known RBP	13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	CSH1	P0DML2	217 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	CSH2	P0DML3	217 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	RDX	P35241	583 aa	Known RBP	13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	HOXD12	P35452	270 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	USP4	Q13107	963 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	NR1H3	Q13133	447 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	ZNF77	Q15935	545 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	ENOX2	Q16206	610 aa	Known RBP	13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	SPDYC	Q5MJ68	293 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	C9orf57	Q5W0N0	161 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	PKD1L2	Q7Z442	2459 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	DCP1B	Q8IZD4	617 aa	Known RBP	13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	DEFB124	Q8NES8	71 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	TRMT2B	Q96GJ1	504 aa	Known RBP	13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	SPACA7	Q96KW9	195 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	CCSER1	Q9C0I3	900 aa		13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	RPF1	Q9H9Y2	349 aa	Known RBP	13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	LARS	Q9P2J5	1176 aa	Known RBP	13.43	□□□□□ -0.26
CAPN1-223	ENST00000533079	NUP205	Q92621	2012 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	ANO9	A1A5B4	782 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	TAF4	O00268	1085 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	PIR	O00625	290 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	TNFRSF10B	O14763	440 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	PPEF2	O14830	753 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	HNRNPDL	O14979	420 aa	Known RBP	13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	JAK2	O60674	1132 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	ALDH1A2	O94788	518 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	PIGR	P01833	764 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	TCF3	P15923	654 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	HMGA1	P17096	107 aa	Known RBP	13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	NMT1	P30419	496 aa	Known RBP	13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	ABCD1	P33897	745 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	TNFSF9	P41273	254 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	IFNAR2	P48551	515 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	LIG4	P49917	911 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	FOSB	P53539	338 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	NCKAP1L	P55160	1127 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	PSMD2	Q13200	908 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	C4orf32	Q8N8J7	132 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	RIN3	Q8TB24	985 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	GIPC2	Q8TF65	315 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	LEO1	Q8WVC0	666 aa	Predicted RBP	13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	EZH1	Q92800	747 aa	Predicted RBP	13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	TPSD1	Q9BZJ3	242 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	HAPLN2	Q9GZV7	340 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	POLR3B	Q9NW08	1133 aa	Predicted RBP	13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	DUS2	Q9NX74	493 aa	Known RBP	13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	ABI2	Q9NYB9	513 aa	Predicted RBP	13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	MMP17	Q9ULZ9	603 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	PCDHB5	Q9Y5E4	795 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	LOC400499	M0QZD8	3231 aa		13.42	□□□□□ -0.26
CAPN1-223	ENST00000533079	TNRC6B	Q9UPQ9	1833 aa	Known RBP	13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	ANKRD11	Q6UB99	2663 aa	Predicted RBP	13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	ZFYVE26	Q68DK2	2539 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	FAM221B	A6H8Z2	402 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	PATE3	B3GLJ2	98 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	HYAL3	O43820	417 aa	Predicted RBP	13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	USP17L7	P0C7H9	530 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	CDC25A	P30304	524 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	PRPH	P41219	470 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	DHPS	P49366	369 aa	Predicted RBP	13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	TAF6	P49848	677 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	PDE6C	P51160	858 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	GUCY2F	P51841	1108 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	IRX4	P78413	519 aa		13.41	□□□□□ -0.26
CAPN1-223	ENST00000533079	GNL2	Q13823	731 aa	Known RBP	13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 78 ms