RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CLTBP09497 229 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 IGFBP6P24592 240 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 ABCD1P33897 745 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 CYLC1P35663 651 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 SCNN1BP51168 640 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 QPCTQ16769 361 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 CCDC38Q502W7 563 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 ZNF667Q5HYK9 610 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 PHLDB3Q6NSJ2 640 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 SEPT8Q92599 483 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 MRRFQ96E11 262 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 CGRRF1Q99675 332 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 TRIM4Q9C037 500 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 TBKBP1A7MCY6 615 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 FOXN3O00409 490 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 MAGOHP61326 146 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 PSMD6Q15008 389 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 DCAF4L1Q3SXM0 396 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 SLC30A9Q6PML9 568 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 ISLR2Q6UXK2 745 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 DSTYKQ6XUX3 929 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 BEST2Q8NFU1 509 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 MAGOHBQ96A72 148 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 HPDLQ96IR7 371 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 PAAF1Q9BRP4 392 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 AP1M1Q9BXS5 423 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 EPN3Q9H201 632 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 INTUQ9ULD6 942 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 PCDHB7Q9Y5E2 793 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 SCN10AQ9Y5Y9 1956 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 CCDC160A6NGH7 325 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 A8MUI8 341 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 F8W810 466 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 ECEL1O95672 775 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 HOXD11P31277 338 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 EIF4A3P38919 411 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 STAT1P42224 750 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 C1orf220Q5T0J3 134 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 KLHDC7AQ5VTJ3 777 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 GLB1LQ6UWU2 654 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 SLC9A9Q8IVB4 645 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 ABTB1Q969K4 478 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 RSAD1Q9HA92 442 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 APEX2Q9UBZ4 518 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 TRIP11Q15643 1979 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 TRIOBPQ9H2D6 2365 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 SMIM28A0A1B0GU29 152 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 HCRTO43612 131 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 NEFHP12036 1026 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 ACAT1P24752 427 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 SCTRP47872 440 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 LAMB3Q13751 1172 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 CCDC6Q16204 474 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 RFX8Q6ZV50 586 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 ANKS4BQ8N8V4 417 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 C1orf127Q8N9H9 656 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 SPATA4Q8NEY3 305 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 KCNK9Q9NPC2 374 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 RBM12Q9NTZ6 932 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 FAM49BQ9NUQ9 324 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 MIOSQ9NXC5 875 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 SIK3Q9Y2K2 1263 aa9.18□□□□□ -0.94
LIMCH1-209ENST00000509277 ZNF236Q9UL36 1845 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 A0A1B0GVG6 124 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 LRRC10BA6NIK2 292 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 THP07101 528 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 TUBBP07437 444 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 KCNJ6P48051 423 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 GFPT1Q06210 699 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 SMG8Q8ND04 991 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 KLHL29Q96CT2 875 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 B3GALT6Q96L58 329 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 MFSD14AQ96MC6 490 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 ALS2CR12Q96Q35 445 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 LPIN3Q9BQK8 851 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 DDX23Q9BUQ8 820 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 HAUS4Q9H6D7 363 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 SMYD3Q9H7B4 428 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 SAMD15Q9P1V8 674 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 ARL5CA6NH57 179 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 TMEM110-MUSTN1A8MSY1 372 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 THAP12O43422 761 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 TNFAIP3P21580 790 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 ITGB8P26012 769 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 MFAP3P55082 362 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 RWDD2BP57060 319 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 ZBED6P86452 979 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 MFSD4BQ5TF39 518 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 B4GALNT2Q8NHY0 566 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 TAF4BQ92750 862 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 BADQ92934 168 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 SEC16BQ96JE7 1060 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 ERGIC2Q96RQ1 377 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 NUP58Q9BVL2 599 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 MYO1AQ9UBC5 1043 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 GMNCA6NCL1 334 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 DNAJB2P25686 324 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 MDH1P40925 334 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 GRM5P41594 1212 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms