RNA–Protein interactions for RNA: ENST00000492650.1

VPS36-205, Transcript of vacuolar protein sorting 36 homolog, human

TSL 5

Gene VPS36, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS36-205	ENST00000492650	FAM46D	Q8NEK8	389 aa		4.23	□□□□□ -1.73
VPS36-205	ENST00000492650	KLHDC4	Q8TBB5	520 aa		4.23	□□□□□ -1.73
VPS36-205	ENST00000492650	DDX17	Q92841	729 aa	Known RBP	4.23	□□□□□ -1.73
VPS36-205	ENST00000492650	RGMA	Q96B86	450 aa		4.23	□□□□□ -1.73
VPS36-205	ENST00000492650	SMAD5	Q99717	465 aa	Known RBP	4.23	□□□□□ -1.73
VPS36-205	ENST00000492650	SLC13A1	Q9BZW2	595 aa		4.23	□□□□□ -1.73
VPS36-205	ENST00000492650	WDCP	Q9H6R7	721 aa		4.23	□□□□□ -1.73
VPS36-205	ENST00000492650	FEZ2	Q9UHY8	353 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS36-205	ENST00000492650	ZDHHC8	Q9ULC8	765 aa		4.23	□□□□□ -1.73
VPS36-205	ENST00000492650	COL4A3BP	Q9Y5P4	624 aa		4.23	□□□□□ -1.73
VPS36-205	ENST00000492650	WASHC2C	Q9Y4E1	1318 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	QSOX1	O00391	747 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	JTB	O76095	146 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	SNUPN	O95149	360 aa	Known RBP	4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	ZRANB2	O95218	330 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	MAP4K4	O95819	1239 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	JUP	P14923	745 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	KEL	P23276	732 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	CYP2C18	P33260	490 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	TOB1	P50616	345 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	FXR1	P51114	621 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	CCDC157	Q569K6	752 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	ZNF618	Q5T7W0	954 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	TEDDM1	Q5T9Z0	273 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	LAYN	Q6UX15	382 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	SLC29A4	Q7RTT9	530 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	PCSK9	Q8NBP7	692 aa	Known RBP	4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	MORC4	Q8TE76	937 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	NELL2	Q99435	816 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	TTYH3	Q9C0H2	523 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	MRPL46	Q9H2W6	279 aa	Known RBP	4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	NRIP3	Q9NQ35	241 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	SERHL	Q9NQF3	203 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	CHPF2	Q9P2E5	772 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	SERGEF	Q9UGK8	458 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	PCDHA1	Q9Y5I3	950 aa		4.22	□□□□□ -1.73
VPS36-205	ENST00000492650	SMIM22	K7EJ46	135 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	AHSG	P02765	367 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	CYP2D6	P10635	497 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	MPG	P29372	298 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	RECQL	P46063	649 aa	Predicted RBP	4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	HK3	P52790	923 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	AMPD3	Q01432	767 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	SLC44A4	Q53GD3	710 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	FAM160B1	Q5W0V3	765 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	ICE2	Q659A1	982 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	ZNF626	Q68DY1	528 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	SFRP4	Q6FHJ7	346 aa	Predicted RBP	4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	PPP1R32	Q7Z5V6	425 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	PPP1R3B	Q86XI6	285 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	SLC46A1	Q96NT5	459 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	PCDH12	Q9NPG4	1184 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	LMBRD1	Q9NUN5	540 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	SPEF1	Q9Y4P9	236 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	ZNF804B	A4D1E1	1349 aa		4.21	□□□□□ -1.74
VPS36-205	ENST00000492650	CCDC194	A0A1B0GVG4	234 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650		H3BUI4	141 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	IL33	O95760	270 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	TYR	P14679	529 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	EPHB2	P29323	1055 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	PDE1A	P54750	535 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	EEFSEC	P57772	596 aa	Known RBP	4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	TCF15	Q12870	199 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	BOP1	Q14137	746 aa	Known RBP	4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	PCID2	Q5JVF3	399 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	TREML2	Q5T2D2	321 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	PRAMEF17	Q5VTA0	474 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	ANKRD16	Q6P6B7	361 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	USP45	Q70EL2	814 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	DTX2	Q86UW9	622 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	SMC5	Q8IY18	1101 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	FAM109A	Q8N4B1	249 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	ZNF366	Q8N895	744 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	TBC1D5	Q92609	795 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	SEMA4C	Q9C0C4	833 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	PNPO	Q9NVS9	261 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650	SERTAD3	Q9UJW9	196 aa		4.2	□□□□□ -1.74
VPS36-205	ENST00000492650		H0YIZ8	118 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	SLC16A3	O15427	465 aa	Known RBP	4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	TLR5	O60602	858 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	PEX14	O75381	377 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	PIM1	P11309	404 aa	Predicted RBP	4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	ITGB6	P18564	788 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	CERS1	P27544	350 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	PCSK6	P29122	969 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	LIPA	P38571	399 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	CLCN2	P51788	898 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	MAP2K6	P52564	334 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	ZNF134	P52741	427 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	SSBP2	P81877	361 aa	Predicted RBP	4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	EXOSC9	Q06265	439 aa	Known RBP	4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	PROSER3	Q2NL68	480 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	PGS1	Q32NB8	556 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	PLEKHG6	Q3KR16	790 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	LONRF3	Q496Y0	759 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	AMOT	Q4VCS5	1084 aa		4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	AARS2	Q5JTZ9	985 aa	Known RBP	4.19	□□□□□ -1.74
VPS36-205	ENST00000492650	ARHGAP40	Q5TG30	622 aa		4.19	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms