RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 PDCL2Q8N4E4 241 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 CXorf38Q8TB03 319 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 FAM200AQ8TCP9 573 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 NOC3LQ8WTT2 800 aaKnown RBP20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 SEPT5Q99719 369 aaPredicted RBP20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 LTB4R2Q9NPC1 389 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 INTS13Q9NVM9 706 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 HSPBP1Q9NZL4 362 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 PCDHB5Q9Y5E4 795 aa20.52■□□□□ 0.88
CCDC28A-203ENST00000617445 USP34Q70CQ2 3546 aa20.52■□□□□ 0.87
CCDC28A-203ENST00000617445 TNNC2P02585 160 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 KRT19P08727 400 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 HAPLN1P10915 354 aaPredicted RBP20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 CDC25CP30307 473 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 HOXD13P35453 343 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 LHX1P48742 406 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 MYL7Q01449 175 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 EHHADHQ08426 723 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 TAF12Q16514 161 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 FOXD4L6Q3SYB3 417 aaPredicted RBP20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 FOXD4L3Q6VB84 417 aaPredicted RBP20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 GAREM2Q75VX8 874 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 DPH6Q7L8W6 267 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 FRMD5Q7Z6J6 570 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 TTC9BQ8N6N2 239 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 TOP6BLQ8N6T0 577 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 GLIS3Q8NEA6 775 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 LEO1Q8WVC0 666 aaPredicted RBP20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 HPS3Q969F9 1004 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 CLDN23Q96B33 292 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 ATXN3LQ9H3M9 355 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 ZNF334Q9HCZ1 680 aaPredicted RBP20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 ABCB6Q9NP58 842 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 HEBP1Q9NRV9 189 aa20.51■□□□□ 0.87
CCDC28A-203ENST00000617445 HEPACAM2A8MVW5 462 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 NRG2O14511 850 aaPredicted RBP20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 ZNF263O14978 683 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 GDI1P31150 447 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 VIPR2P41587 438 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 RPS9P46781 194 aaKnown RBP20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 BFSP1Q12934 665 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 GRM2Q14416 872 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 C1orf228Q6PIY5 440 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 HS2ST1Q7LGA3 356 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 WDR49Q8IV35 697 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 CEP57L1Q8IYX8 460 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 GCNAQ96QF7 691 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 MTMR12Q9C0I1 747 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 OBP2AQ9NY56 170 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 ABI2Q9NYB9 513 aaPredicted RBP20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 SIX4Q9UIU6 781 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 L1RE1Q9UN81 338 aa20.5■□□□□ 0.87
CCDC28A-203ENST00000617445 PRR23AA6NEV1 266 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 SOBPA7XYQ1 873 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 CHADO15335 359 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 PRPF40AO75400 957 aaKnown RBP20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 SOAT2O75908 522 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 SLFN14P0C7P3 912 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 ATF6P18850 670 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 GABRR2P28476 465 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 PCSK1P29120 753 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 DNM1Q05193 864 aaKnown RBP20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 ZC3H14Q6PJT7 736 aaKnown RBP20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 CBWD2Q8IUF1 395 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 ARID3BQ8IVW6 561 aaPredicted RBP20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 YAF2Q8IY57 180 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 SCFD1Q8WVM8 642 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 MSANTD3Q96H12 275 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 TASP1Q9H6P5 420 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 AGPAT3Q9NRZ7 376 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 DDX43Q9NXZ2 648 aaKnown RBP20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 USP25Q9UHP3 1055 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 SNX9Q9Y5X1 595 aa20.49■□□□□ 0.87
CCDC28A-203ENST00000617445 NUP210Q8TEM1 1887 aaPredicted RBP20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 DPYSL4O14531 572 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 GABRDO14764 452 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 TGFB1I1O43294 461 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 FCHO2Q0JRZ9 810 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 PKP1Q13835 747 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 SNRNP35Q16560 246 aaKnown RBP20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 BMT2Q1RMZ1 405 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 ZNF528Q3MIS6 628 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 INTS6LQ5JSJ4 861 aaKnown RBP20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 GPR158Q5T848 1215 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 C12orf56Q8IXR9 622 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 XXYLT1Q8NBI6 393 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 GOLGA5Q8TBA6 731 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 HPDLQ96IR7 371 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 LPIN3Q9BQK8 851 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 FBXO4Q9UKT5 387 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 MTF2Q9Y483 593 aaPredicted RBP20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 FANCMQ8IYD8 2048 aa20.48■□□□□ 0.87
CCDC28A-203ENST00000617445 LAMTOR5O43504 91 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 MYL1P05976 194 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 FAM163BP0C2L3 166 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 SP9P0CG40 484 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 CSH1P0DML2 217 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 CSH2P0DML3 217 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 CD72P21854 359 aa20.47■□□□□ 0.87
CCDC28A-203ENST00000617445 TARSP26639 723 aaKnown RBP20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms