RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 I3L4J1 428 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 TCF7P36402 384 aaPredicted RBP10.94□□□□□ -0.66
LIG1-220ENST00000601091 SPP2Q13103 211 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 STAT4Q14765 748 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 PLCB4Q15147 1175 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 KYNUQ16719 465 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 CLPPQ16740 277 aaPredicted RBP10.94□□□□□ -0.66
LIG1-220ENST00000601091 CEP78Q5JTW2 689 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 ACAD10Q6JQN1 1059 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 IRGCQ6NXR0 463 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 NPLOC4Q8TAT6 608 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 GIPC2Q8TF65 315 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 PYROXD1Q8WU10 500 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 HES6Q96HZ4 224 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 TTC25Q96NG3 672 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 TGS1Q96RS0 853 aaKnown RBP10.94□□□□□ -0.66
LIG1-220ENST00000601091 SEMA4AQ9H3S1 761 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 TTC7AQ9ULT0 858 aaPredicted RBP10.94□□□□□ -0.66
LIG1-220ENST00000601091 TBX20Q9UMR3 447 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 PLIN4Q96Q06 1357 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 C2orf81A6NN90 581 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 PIK3CDO00329 1044 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 MAPK13O15264 365 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 PSMD10O75832 226 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 DNAJC8O75937 253 aaPredicted RBP10.94□□□□□ -0.66
LIG1-220ENST00000601091 IL33O95760 270 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 PAHP00439 452 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 ICAM1P05362 532 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 CYP11B1P15538 503 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 MSH2P43246 934 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 TKFCQ3LXA3 575 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 TRIM68Q6AZZ1 485 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 CIAPIN1Q6FI81 312 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 BTNL9Q6UXG8 535 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 CCBE1Q6UXH8 406 aaPredicted RBP10.94□□□□□ -0.66
LIG1-220ENST00000601091 ARHGAP24Q8N264 748 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 PDCD7Q8N8D1 485 aaKnown RBP10.94□□□□□ -0.66
LIG1-220ENST00000601091 LNX1Q8TBB1 728 aaPredicted RBP10.94□□□□□ -0.66
LIG1-220ENST00000601091 BTBD6Q96KE9 485 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 SIKE1Q9BRV8 207 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 GPRC5CQ9NQ84 441 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 NXF1Q9UBU9 619 aaKnown RBP10.94□□□□□ -0.66
LIG1-220ENST00000601091 L3MBTL1Q9Y468 752 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 DCDC2CA8MYV0 355 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 CRY1Q16526 586 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 QPCTQ16769 361 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 DACT2Q5SW24 774 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 SNRNP48Q6IEG0 339 aaKnown RBP10.93□□□□□ -0.66
LIG1-220ENST00000601091 STYK1Q6J9G0 422 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 RSBN1LQ6PCB5 846 aaPredicted RBP10.93□□□□□ -0.66
LIG1-220ENST00000601091 PRR23CQ6ZRP0 262 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 TRPM8Q7Z2W7 1104 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 LINC00469Q8N7U9 141 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 SMC1BQ8NDV3 1235 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 ATP8B4Q8TF62 1192 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 SLC35B4Q969S0 331 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 POLR3FQ9H1D9 316 aaPredicted RBP10.93□□□□□ -0.66
LIG1-220ENST00000601091 LRRC4BQ9NT99 713 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 RBAKQ9NYW8 714 aaPredicted RBP10.93□□□□□ -0.66
LIG1-220ENST00000601091 SH3GLB1Q9Y371 365 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 USP15Q9Y4E8 981 aaPredicted RBP10.93□□□□□ -0.66
LIG1-220ENST00000601091 NWD2Q9ULI1 1742 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 KDM4FA0A1W2PPD8 638 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 TMEM120BA0PK00 339 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 LRRC72A6NJI9 287 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 SRRM3A6NNA2 597 aaPredicted RBP10.93□□□□□ -0.66
LIG1-220ENST00000601091 GOLGA8MH3BSY2 632 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 CALB1P05937 261 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 MAPTP10636 758 aaKnown RBP10.93□□□□□ -0.66
LIG1-220ENST00000601091 SKIV2L2P42285 1042 aaKnown RBP10.93□□□□□ -0.66
LIG1-220ENST00000601091 C21orf62-AS1Q17RA5 79 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 EPC2Q52LR7 807 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 ZBTB33Q86T24 672 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 PDIK1LQ8N165 341 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 HAUS1Q96CS2 278 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 TMEM39BQ9GZU3 492 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 TMEM117Q9H0C3 514 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 ZNF277Q9NRM2 450 aaPredicted RBP10.93□□□□□ -0.66
LIG1-220ENST00000601091 PARVAQ9NVD7 372 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 SNX5Q9Y5X3 404 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 NUP98P52948 1817 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 TTLL13PA6NNM8 815 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 SPTLC1O15269 473 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 TRAPPC3O43617 180 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 INHBAP08476 426 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 RARRES1P49788 294 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 BAATQ14032 418 aaPredicted RBP10.93□□□□□ -0.66
LIG1-220ENST00000601091 SHROOM1Q2M3G4 852 aaPredicted RBP10.93□□□□□ -0.66
LIG1-220ENST00000601091 SPRED3Q2MJR0 410 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 PPP1R15BQ5SWA1 713 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 SCYL2Q6P3W7 929 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 SLC47A2Q86VL8 602 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 RFX6Q8HWS3 928 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 GRAMD2AQ8IUY3 354 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 GRAMD1AQ96CP6 724 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 C9orf72Q96LT7 481 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 SRPK1Q96SB4 655 aaKnown RBP10.93□□□□□ -0.66
LIG1-220ENST00000601091 OXCT2Q9BYC2 517 aaPredicted RBP10.93□□□□□ -0.66
LIG1-220ENST00000601091 MIS12Q9H081 205 aa10.93□□□□□ -0.66
LIG1-220ENST00000601091 PCSK1NQ9UHG2 260 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms