RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ZNF516Q92618 1163 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 PGLYRP2Q96PD5 576 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 ACBD6Q9BR61 282 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 DNAI2Q9GZS0 605 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 MMRN2Q9H8L6 949 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 TMEM8AQ9HCN3 771 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 ARMCX3Q9UH62 379 aaPredicted RBP13.92□□□□□ -0.18
CLK3-224ENST00000568605 CDH22Q9UJ99 828 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 YIPF1Q9Y548 306 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 PPP1R3GB7ZBB8 358 aa13.91□□□□□ -0.18
CLK3-224ENST00000568605 TACC1O75410 805 aa13.91□□□□□ -0.18
CLK3-224ENST00000568605 GNA14O95837 355 aa13.91□□□□□ -0.18
CLK3-224ENST00000568605 C4BPAP04003 597 aaKnown RBP13.91□□□□□ -0.18
CLK3-224ENST00000568605 FAM163BP0C2L3 166 aa13.91□□□□□ -0.18
CLK3-224ENST00000568605 CD44P16070 742 aaKnown RBP13.91□□□□□ -0.18
CLK3-224ENST00000568605 WARSP23381 471 aaKnown RBP13.91□□□□□ -0.18
CLK3-224ENST00000568605 SP100P23497 879 aaPredicted RBP13.91□□□□□ -0.18
CLK3-224ENST00000568605 ALDH1A3P47895 512 aa13.91□□□□□ -0.18
CLK3-224ENST00000568605 TUFMP49411 452 aaKnown RBP13.91□□□□□ -0.18
CLK3-224ENST00000568605 PMS1P54277 932 aaKnown RBP13.91□□□□□ -0.18
CLK3-224ENST00000568605 MYL6P60660 151 aa13.91□□□□□ -0.18
CLK3-224ENST00000568605 VEPH1Q14D04 833 aa13.91□□□□□ -0.18
CLK3-224ENST00000568605 SOWAHAQ2M3V2 549 aa13.91□□□□□ -0.18
CLK3-224ENST00000568605 PABPC1LQ4VXU2 614 aaKnown RBP13.91□□□□□ -0.18
CLK3-224ENST00000568605 INTS6LQ5JSJ4 861 aaKnown RBP13.91□□□□□ -0.18
CLK3-224ENST00000568605 SV2AQ7L0J3 742 aa13.91□□□□□ -0.18
CLK3-224ENST00000568605 GET4Q7L5D6 327 aaPredicted RBP13.91□□□□□ -0.18
CLK3-224ENST00000568605 XYLT2Q9H1B5 865 aa13.91□□□□□ -0.18
CLK3-224ENST00000568605 SNX25Q9H3E2 840 aa13.91□□□□□ -0.18
CLK3-224ENST00000568605 NXF1Q9UBU9 619 aaKnown RBP13.91□□□□□ -0.18
CLK3-224ENST00000568605 PCDHB5Q9Y5E4 795 aa13.91□□□□□ -0.18
CLK3-224ENST00000568605 ZFP37Q9Y6Q3 630 aaPredicted RBP13.91□□□□□ -0.18
CLK3-224ENST00000568605 MIA3Q5JRA6 1907 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 GABRDO14764 452 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 N4BP1O75113 896 aaKnown RBP13.9□□□□□ -0.18
CLK3-224ENST00000568605 ASS1P00966 412 aaKnown RBP13.9□□□□□ -0.18
CLK3-224ENST00000568605 CST3P01034 146 aaPredicted RBP13.9□□□□□ -0.18
CLK3-224ENST00000568605 HLA-DRAP01903 254 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 PTPN2P17706 415 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 BMP6P22004 513 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 FSHRP23945 695 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 GBP2P32456 591 aaPredicted RBP13.9□□□□□ -0.18
CLK3-224ENST00000568605 GCLMP48507 274 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 EPHB3P54753 998 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 NOP14P78316 857 aaKnown RBP13.9□□□□□ -0.18
CLK3-224ENST00000568605 TWF1Q12792 350 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 TTI2Q6NXR4 508 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 C4orf50Q6ZRC1 276 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 GRASPQ7Z6J2 395 aaPredicted RBP13.9□□□□□ -0.18
CLK3-224ENST00000568605 FRMD5Q7Z6J6 570 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 FILIP1Q7Z7B0 1213 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 ITIH5Q86UX2 942 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 EEF2KMTQ96G04 330 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 ZNF512Q96ME7 567 aaPredicted RBP13.9□□□□□ -0.18
CLK3-224ENST00000568605 TMEM209Q96SK2 561 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 SEPT5Q99719 369 aaPredicted RBP13.9□□□□□ -0.18
CLK3-224ENST00000568605 RTP3Q9BQQ7 232 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 SYT15Q9BQS2 421 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 ABCB6Q9NP58 842 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 ASAH2Q9NR71 780 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 ABI2Q9NYB9 513 aaPredicted RBP13.9□□□□□ -0.18
CLK3-224ENST00000568605 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLK3-224ENST00000568605 RWDD2AQ9UIY3 292 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 CDH9Q9ULB4 789 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 ASB3Q9Y575 518 aa13.9□□□□□ -0.18
CLK3-224ENST00000568605 KIF26AQ9ULI4 1882 aaPredicted RBP13.89□□□□□ -0.19
CLK3-224ENST00000568605 C2CD4DB7Z1M9 353 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 SEC24AO95486 1093 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 VNN1O95497 513 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 CCDC192P0DO97 292 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 ALADP13716 330 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 ACAT1P24752 427 aaKnown RBP13.89□□□□□ -0.19
CLK3-224ENST00000568605 PPP3CAQ08209 521 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 CETN1Q12798 172 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 DUSP4Q13115 394 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 TAF12Q16514 161 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 TPD52L1Q16890 204 aaPredicted RBP13.89□□□□□ -0.19
CLK3-224ENST00000568605 MGAT5BQ3V5L5 792 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 C1orf220Q5T0J3 134 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 SCARA5Q6ZMJ2 495 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 PDZD4Q76G19 769 aaPredicted RBP13.89□□□□□ -0.19
CLK3-224ENST00000568605 LIMS2Q7Z4I7 341 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 OSTM1Q86WC4 334 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 RNF135Q8IUD6 432 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 SPATA2LQ8IUW3 424 aaPredicted RBP13.89□□□□□ -0.19
CLK3-224ENST00000568605 ZDHHC14Q8IZN3 488 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 FBXL13Q8NEE6 735 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 OR6B3Q8NGW1 331 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 FAM200AQ8TCP9 573 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 KBTBD7Q8WVZ9 684 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 FUBP3Q96I24 572 aaKnown RBP eCLIP13.89□□□□□ -0.19
CLK3-224ENST00000568605 AVENQ9NQS1 362 aaPredicted RBP13.89□□□□□ -0.19
CLK3-224ENST00000568605 TICRRQ7Z2Z1 1910 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 ATP8B3O60423 1300 aa13.89□□□□□ -0.19
CLK3-224ENST00000568605 A0A0C4DFX4 3053 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 ZNF197O14709 1029 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 FGF19O95750 216 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 GNL1P36915 607 aaPredicted RBP13.88□□□□□ -0.19
CLK3-224ENST00000568605 STX17P56962 302 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 NLRP12P59046 1061 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms