RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 PTPN20Q4JDL3 420 aa19.59■□□□□ 0.73
PRPF40B-208ENST00000548436 LRRC38Q5VT99 294 aa19.59■□□□□ 0.73
PRPF40B-208ENST00000548436 C9orf131Q5VYM1 1079 aa19.59■□□□□ 0.73
PRPF40B-208ENST00000548436 MFSD5Q6N075 450 aa19.59■□□□□ 0.73
PRPF40B-208ENST00000548436 CHADLQ6NUI6 762 aa19.59■□□□□ 0.73
PRPF40B-208ENST00000548436 TAPT1Q6NXT6 567 aa19.59■□□□□ 0.73
PRPF40B-208ENST00000548436 CCDC89Q8N998 374 aa19.59■□□□□ 0.73
PRPF40B-208ENST00000548436 XPO6Q96QU8 1125 aaKnown RBP19.59■□□□□ 0.73
PRPF40B-208ENST00000548436 ROPN1BQ9BZX4 212 aaPredicted RBP19.59■□□□□ 0.73
PRPF40B-208ENST00000548436 ROPN1Q9HAT0 212 aaPredicted RBP19.59■□□□□ 0.73
PRPF40B-208ENST00000548436 PRMT7Q9NVM4 692 aaPredicted RBP19.59■□□□□ 0.73
PRPF40B-208ENST00000548436 DNPEPQ9ULA0 475 aa19.59■□□□□ 0.73
PRPF40B-208ENST00000548436 CEP83Q9Y592 693 aa19.59■□□□□ 0.73
PRPF40B-208ENST00000548436 A0A087WZ62 844 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 LOC102724159A0A0B4J2E5 919 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 LIASO43766 372 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 TTC4O95801 387 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 STAG3L1P0CL83 205 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 CD19P15391 556 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 CETN2P41208 172 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 RAD23BP54727 409 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 TAP1Q03518 808 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 PIGHQ14442 188 aaPredicted RBP19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 PWP2Q15269 919 aaKnown RBP19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 KYNUQ16719 465 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 ZNF667Q5HYK9 610 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 ZNF484Q5JVG2 852 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 JADE1Q6IE81 842 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 MAMDC4Q6UXC1 1216 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 SPOCD1Q6ZMY3 1216 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 USP50Q70EL3 339 aaPredicted RBP19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 SPATS2Q86XZ4 545 aaKnown RBP19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 SHCBP1Q8NEM2 672 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 FDXACB1Q9BRP7 624 aaPredicted RBP19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 TSPYL1Q9H0U9 437 aa19.58■□□□□ 0.73
PRPF40B-208ENST00000548436 ATXN2Q99700 1313 aaKnown RBP19.58■□□□□ 0.72
PRPF40B-208ENST00000548436 PHKA2P46019 1235 aa19.58■□□□□ 0.72
PRPF40B-208ENST00000548436 YWHAEP62258 255 aaKnown RBP19.58■□□□□ 0.72
PRPF40B-208ENST00000548436 FAM187BQ17R55 369 aa19.58■□□□□ 0.72
PRPF40B-208ENST00000548436 IZUMO3Q5VZ72 239 aa19.58■□□□□ 0.72
PRPF40B-208ENST00000548436 LINC01465Q8N7H1 131 aa19.58■□□□□ 0.72
PRPF40B-208ENST00000548436 NIPA2Q8N8Q9 360 aa19.58■□□□□ 0.72
PRPF40B-208ENST00000548436 GLIS1Q8NBF1 620 aa19.58■□□□□ 0.72
PRPF40B-208ENST00000548436 CXorf38Q8TB03 319 aa19.58■□□□□ 0.72
PRPF40B-208ENST00000548436 ATXN2LQ8WWM7 1075 aaKnown RBP19.58■□□□□ 0.72
PRPF40B-208ENST00000548436 CPB2Q96IY4 423 aa19.58■□□□□ 0.72
PRPF40B-208ENST00000548436 SMYD3Q9H7B4 428 aa19.58■□□□□ 0.72
PRPF40B-208ENST00000548436 CITO14578 2027 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 TRIP11Q15643 1979 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 A0A087WUV0 522 aaPredicted RBP19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 GOLGA8SH3BPF8 625 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 TJP3O95049 919 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 ITGB3P05106 788 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 EPHX2P34913 555 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 RFC1P35251 1148 aaPredicted RBP19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 CDR1P51861 262 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 LAMC2Q13753 1193 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 CCDC38Q502W7 563 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 GSTA5Q7RTV2 222 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 TWNKQ96RR1 684 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 LHX5Q9H2C1 402 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 PDZD7Q9H5P4 517 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 NINJ2Q9NZG7 142 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 HMGXB4Q9UGU5 601 aa19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 DDX20Q9UHI6 824 aaKnown RBP19.57■□□□□ 0.72
PRPF40B-208ENST00000548436 KAT6AQ92794 2004 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 VTNP04004 478 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 POU5F1BQ06416 359 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 SNAPC2Q13487 334 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 ZNF792Q3KQV3 632 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 ARMC9Q7Z3E5 817 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 JOSD2Q8TAC2 188 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 ZC3H15Q8WU90 426 aaKnown RBP19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 STRIP2Q9ULQ0 834 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 hCG_1818297A0A087WSY0 165 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 C5orf60A6NFR6 353 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 ZNF286BP0CG31 522 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 MCF2P10911 925 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 YBX3P16989 372 aaKnown RBP eCLIP19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 CDKN2BP42772 138 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 COPS2P61201 443 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 P3H1Q32P28 736 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 HIBCHQ6NVY1 386 aaPredicted RBP19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 C6orf89Q6UWU4 347 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 EXOC3L1Q86VI1 746 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 ARFGAP1Q8N6T3 406 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 SLC4A11Q8NBS3 891 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 BBOF1Q8ND07 529 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 IPO4Q8TEX9 1081 aaKnown RBP19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 STMN4Q9H169 189 aaPredicted RBP19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 GGA2Q9UJY4 613 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 AKT3Q9Y243 479 aa19.56■□□□□ 0.72
PRPF40B-208ENST00000548436 SIGLEC16A6NMB1 481 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 MED7O43513 233 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 ZSCAN5DPP0CG00 497 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 DRD4P21917 467 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 ADORA2AP29274 412 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 PTPN7P35236 360 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 SLC10A6Q3KNW5 377 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 TFDP3Q5H9I0 405 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms