RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 LILRB3O75022 631 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 NOL4O94818 638 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 RFX1P22670 979 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 PCSK1P29120 753 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 IRS1P35568 1242 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 PBX1P40424 430 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 ZNF75DP51815 510 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 NDST1P52848 882 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 POLR2FP61218 127 aaKnown RBP12.38□□□□□ -0.43
YBX3-213ENST00000542641 CREMQ03060 361 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 INCA1Q0VD86 236 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 RAPGEF1Q13905 1077 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 ARHGAP44Q17R89 818 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 UNC93AQ86WB7 457 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 FAM161BQ96MY7 647 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 RTP3Q9BQQ7 232 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 ACBD6Q9BR61 282 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 DNAI2Q9GZS0 605 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 GANQ9H2C0 597 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 FAM124BQ9H5Z6 455 aaPredicted RBP12.38□□□□□ -0.43
YBX3-213ENST00000542641 GRPEL1Q9HAV7 217 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.38□□□□□ -0.43
YBX3-213ENST00000542641 MTRRQ9UBK8 725 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 FBXL5Q9UKA1 691 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 BARX2Q9UMQ3 279 aaPredicted RBP12.38□□□□□ -0.43
YBX3-213ENST00000542641 STXBP5LQ9Y2K9 1186 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 PCDHB4Q9Y5E5 795 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 PCDHGC5Q9Y5F6 944 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 BACE2Q9Y5Z0 518 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 FHOD1Q9Y613 1164 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 C2orf71A6NGG8 1288 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 OR6C75A6NL08 312 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 HIDE1A8MVS5 230 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 EPHB6O15197 1021 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 HCRTO43612 131 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 CILPO75339 1184 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 KRT5P13647 590 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 RPL17P18621 184 aaKnown RBP12.37□□□□□ -0.43
YBX3-213ENST00000542641 ACO1P21399 889 aaKnown RBP12.37□□□□□ -0.43
YBX3-213ENST00000542641 ACAT1P24752 427 aaKnown RBP12.37□□□□□ -0.43
YBX3-213ENST00000542641 OR1D2P34982 312 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 ARPP19P56211 112 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 DRAP1Q14919 205 aaPredicted RBP12.37□□□□□ -0.43
YBX3-213ENST00000542641 ZNF394Q53GI3 561 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 GPR153Q6NV75 609 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 TMEM270Q6UE05 265 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 CACNA2D4Q7Z3S7 1137 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 MRPL38Q96DV4 380 aaKnown RBP12.37□□□□□ -0.43
YBX3-213ENST00000542641 TNIP3Q96KP6 325 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 CLSTN3Q9BQT9 956 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 NUP58Q9BVL2 599 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 NT5C1AQ9BXI3 368 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 NAA15Q9BXJ9 866 aaKnown RBP12.37□□□□□ -0.43
YBX3-213ENST00000542641 EMILIN2Q9BXX0 1053 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 STK33Q9BYT3 514 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 RXFP1Q9HBX9 757 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 NLRC4Q9NPP4 1024 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 FNIP2Q9P278 1114 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 AJAP1Q9UKB5 411 aaPredicted RBP12.37□□□□□ -0.43
YBX3-213ENST00000542641 CDH9Q9ULB4 789 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 DAAM1Q9Y4D1 1078 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 IRAK3Q9Y616 596 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 CDY1Q9Y6F8 540 aa12.37□□□□□ -0.43
YBX3-213ENST00000542641 TEX28O15482 410 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 TBC1D4O60343 1298 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 ADCY5O95622 1261 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 CNPP09543 421 aaKnown RBP12.36□□□□□ -0.43
YBX3-213ENST00000542641 CPB1P15086 417 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 PTPN1P18031 435 aaKnown RBP12.36□□□□□ -0.43
YBX3-213ENST00000542641 KLRC2P26717 231 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 USP8P40818 1118 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 NDUFV1P49821 464 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 PSMC1P62191 440 aaKnown RBP12.36□□□□□ -0.43
YBX3-213ENST00000542641 TSPY1Q01534 308 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 ORC1Q13415 861 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 SPECC1LQ69YQ0 1117 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 RSPO2Q6UXX9 243 aaPredicted RBP12.36□□□□□ -0.43
YBX3-213ENST00000542641 ACOT1Q86TX2 421 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 GLYCTKQ8IVS8 523 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 VSTM4Q8IW00 320 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 UBR7Q8N806 425 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 OR10T2Q8NGX3 314 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 WHAMMQ8TF30 809 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 TMEM176AQ96HP8 235 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 MRFAP1L1Q96HT8 127 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 KLHL5Q96PQ7 755 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 SPAG5Q96R06 1193 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 TMEM209Q96SK2 561 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 SYT15Q9BQS2 421 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 DPEP3Q9H4B8 488 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 CEP72Q9P209 647 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 HMGXB4Q9UGU5 601 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 NME7Q9Y5B8 376 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.36□□□□□ -0.436e-8■□□□□ 9.9
YBX3-213ENST00000542641 PLXNA4Q9HCM2 1894 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 ITIH6Q6UXX5 1313 aa12.36□□□□□ -0.43
YBX3-213ENST00000542641 MYBPHLA2RUH7 354 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 F8VZ95 297 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 FOXN3O00409 490 aaPredicted RBP12.35□□□□□ -0.43
YBX3-213ENST00000542641 ADAM12O43184 909 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms