RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ELAC2Q9BQ52 826 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 STRA6Q9BX79 667 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 NOD2Q9HC29 1040 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 PLCB1Q9NQ66 1216 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 RAB20Q9NX57 234 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 STIM2Q9P246 746 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 FAM153AQ9UHL3 310 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 POLIQ9UNA4 740 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 CNTNAP2Q9UHC6 1331 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 GOLGA8KD6RF30 607 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 SLC16A3O15427 465 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 SELPP16109 830 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 CST5P28325 142 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 ARPP19P56211 112 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 KLHL30Q0D2K2 578 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 DRAP1Q14919 205 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 TAF11Q15544 211 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 SLC10A6Q3KNW5 377 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 PREPLQ4J6C6 727 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 COL13A1Q5TAT6 717 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 FUKQ8N0W3 1084 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 NME8Q8N427 588 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 TTC16Q8NEE8 873 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 ZNF483Q8TF39 744 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 ZBED2Q9BTP6 218 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 GOLPH3Q9H4A6 298 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 DMAC2Q9NW81 257 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 PLAGL2Q9UPG8 496 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 PHF24Q9UPV7 400 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 PPME1Q9Y570 386 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 PCDHB4Q9Y5E5 795 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 PPEF2O14830 753 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 ZC3H11AO75152 810 aaKnown RBP eCLIP9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 PDGFRBP09619 1106 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 GJA8P48165 433 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 ADAM17P78536 824 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 CRYMQ14894 314 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 GKAP1Q5VSY0 366 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 TMEM270Q6UE05 265 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 HACE1Q8IYU2 909 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 C3orf20Q8ND61 904 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 CYFIP2Q96F07 1278 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 TSEN34Q9BSV6 310 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 ST6GALNAC4Q9H4F1 302 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 KIAA1586Q9HCI6 787 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 ABHD10Q9NUJ1 306 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 HCSTQ9UBK5 93 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 CHORDC1Q9UHD1 332 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 AJAP1Q9UKB5 411 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 OGDHLQ9ULD0 1010 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 PIK3R2O00459 728 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 MYZAPP0CAP1 466 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 UCHL3P15374 230 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 OR1G1P47890 313 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 ASIC2Q16515 512 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 C2CD6Q53TS8 623 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 SFMBT2Q5VUG0 894 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 CCDC25Q86WR0 208 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 BRSK2Q8IWQ3 736 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 FAM126BQ8IXS8 530 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 DPP3Q9NY33 737 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 ETAA1Q9NY74 926 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 PLAAQ9Y263 795 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 MROH7Q68CQ1 1323 aa9.2□□□□□ -0.94
LIMCH1-209ENST00000509277 CYP26A1O43174 497 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 TACC1O75410 805 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 CPP00450 1065 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 MCF2P10911 925 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 ABCB4P21439 1286 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 NOP14P78316 857 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 CDC42EP1Q00587 391 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 MCL1Q07820 350 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 DHX9Q08211 1270 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 IFRD2Q12894 506 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 MBTPS1Q14703 1052 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 LRRC14Q15048 493 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 LINC01465Q8N7H1 131 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 OR8K1Q8NGG5 319 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 MKNK1Q9BUB5 465 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 B3GAT3O94766 335 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 SLC8A1P32418 973 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 TNNC1P63316 161 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 FAAP100Q0VG06 881 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 PKN2Q16513 984 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 COBLL1Q53SF7 1204 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 ANKRD42Q8N9B4 389 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 OR6B3Q8NGW1 331 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 ZMAT2Q96NC0 199 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 OSBPL1AQ9BXW6 950 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 TMEM8AQ9HCN3 771 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 RHBDL2Q9NX52 303 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 ADAMTS1Q9UHI8 967 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 CPSF3Q9UKF6 684 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 ARID2Q68CP9 1835 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 LOXHD1Q8IVV2 1947 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 C2CD2LO14523 706 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 NBNO60934 754 aa9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 SNUPNO95149 360 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-209ENST00000509277 IGHA2P01877 340 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms