RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 XIAPP98170 497 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 PDIA2Q13087 525 aaKnown RBP13.87□□□□□ -0.19
USP40-208ENST00000450966 TAB1Q15750 504 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 ZBED8Q8IZ13 594 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 BEST2Q8NFU1 509 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 RAET1EQ8TD07 263 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 TBC1D22BQ9NU19 505 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 ARHGEF38Q9NXL2 777 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 GCNT4Q9P109 453 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 KDM6AO15550 1401 aaPredicted RBP13.86□□□□□ -0.19
USP40-208ENST00000450966 SSU72P8A0A1W2PR75 194 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 OPLAHO14841 1288 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 PRPF3O43395 683 aaKnown RBP13.86□□□□□ -0.19
USP40-208ENST00000450966 HLFQ16534 295 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 RNF220Q5VTB9 566 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 SKA2Q8WVK7 121 aaPredicted RBP13.86□□□□□ -0.19
USP40-208ENST00000450966 RSPH1Q8WYR4 309 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 C20orf96Q9NUD7 363 aaPredicted RBP13.86□□□□□ -0.19
USP40-208ENST00000450966 SLC8A2Q9UPR5 921 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 PCDHB4Q9Y5E5 795 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 F8W8V4 182 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 PIK3R2O00459 728 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 SRP72O76094 671 aaKnown RBP13.86□□□□□ -0.19
USP40-208ENST00000450966 MMP1P03956 469 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 ACADVLP49748 655 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 ATN1P54259 1190 aaPredicted RBP13.86□□□□□ -0.19
USP40-208ENST00000450966 SLC29A2Q14542 456 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 PLEKHM3Q6ZWE6 761 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 PRUNE1Q86TP1 453 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 AENQ8WTP8 325 aaKnown RBP13.86□□□□□ -0.19
USP40-208ENST00000450966 LARP4BQ92615 738 aaKnown RBP13.86□□□□□ -0.19
USP40-208ENST00000450966 ERP44Q9BS26 406 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 UTYO14607 1347 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 WDR19Q8NEZ3 1342 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 TNFRSF21O75509 655 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 DMC1Q14565 340 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 AGBL3Q8NEM8 1001 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 WDR35Q9P2L0 1181 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 DYNLL1P63167 89 aaKnown RBP13.86□□□□□ -0.19
USP40-208ENST00000450966 KYAT1Q16773 422 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 SPICE1Q8N0Z3 855 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 OTULINQ96BN8 352 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 CNDP1Q96KN2 507 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 MLPHQ9BV36 600 aaPredicted RBP13.86□□□□□ -0.19
USP40-208ENST00000450966 RHOBTB2Q9BYZ6 727 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 JMJD4Q9H9V9 463 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 KMT5AQ9NQR1 393 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 PTTG2Q9NZH5 202 aa13.86□□□□□ -0.19
USP40-208ENST00000450966 SYNJ2BP-COX16A0A087WUM0 186 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 WDR64B1ANS9 1081 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 KRT17Q04695 432 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 CYP4A22Q5TCH4 519 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 ZFP1Q6P2D0 407 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 C11orf74Q86VG3 221 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 LPAR1Q92633 364 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 TMA16Q96EY4 203 aaKnown RBP13.85□□□□□ -0.19
USP40-208ENST00000450966 MMP19Q99542 508 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 VPS33BQ9H267 617 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 MARCH7Q9H992 704 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 COX16Q9P0S2 106 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 BTBD3Q9Y2F9 522 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 QRICH2Q9H0J4 1663 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 MYL3P08590 195 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 EPHB2P29323 1055 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 NAA20P61599 178 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 CYFIP1Q7L576 1253 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 PROM2Q8N271 834 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 GCOM2Q9BZD3 368 aaPredicted RBP13.85□□□□□ -0.19
USP40-208ENST00000450966 MOSPD1Q9UJG1 213 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 A0A1W2PRG6 482 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 PDLIM1O00151 329 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 AIM2O14862 343 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 NCKAP1LP55160 1127 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 GPSM2P81274 684 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 PDK3Q15120 406 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 ELMOD1Q8N336 334 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 PCYOX1LQ8NBM8 494 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 URGCPQ8TCY9 931 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 NAT14Q8WUY8 206 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 TRIM51Q9BSJ1 452 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 WDR12Q9GZL7 423 aaKnown RBP13.85□□□□□ -0.19
USP40-208ENST00000450966 SPATA2Q9UM82 520 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 NRKQ7Z2Y5 1582 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 SLC26A4O43511 780 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 GH2P01242 217 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 SMARCA1P28370 1054 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 SKIV2L2P42285 1042 aaKnown RBP13.85□□□□□ -0.19
USP40-208ENST00000450966 GPC5P78333 572 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 LACTB2Q53H82 288 aaPredicted RBP13.85□□□□□ -0.19
USP40-208ENST00000450966 LCORLQ8N3X6 602 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 CHP1Q99653 195 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 TEX12Q9BXU0 123 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 ACAD9Q9H845 621 aa13.85□□□□□ -0.19
USP40-208ENST00000450966 CETPP11597 493 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 SFNP31947 248 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 ABCE1P61221 599 aaKnown RBP13.84□□□□□ -0.19
USP40-208ENST00000450966 CD302Q8IX05 232 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 PPM1NQ8N819 430 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 CPSF3Q9UKF6 684 aaKnown RBP13.84□□□□□ -0.19
USP40-208ENST00000450966 PPRC1Q5VV67 1664 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms