RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 ZBTB39O15060 712 aa16.62■□□□□ 0.25
COL17A1-202ENST00000369733 TM9SF1O15321 606 aa16.62■□□□□ 0.25
COL17A1-202ENST00000369733 CAMTA2O94983 1202 aa16.62■□□□□ 0.25
COL17A1-202ENST00000369733 POLBP06746 335 aa16.62■□□□□ 0.25
COL17A1-202ENST00000369733 MRPS15P82914 257 aaKnown RBP16.62■□□□□ 0.25
COL17A1-202ENST00000369733 NT5DC3Q86UY8 548 aa16.62■□□□□ 0.25
COL17A1-202ENST00000369733 BTBD10Q9BSF8 475 aa16.62■□□□□ 0.25
COL17A1-202ENST00000369733 ASPSCR1Q9BZE9 553 aa16.62■□□□□ 0.25
COL17A1-202ENST00000369733 SLIT1O75093 1534 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 EXTL3O43909 919 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 ABCE1P61221 599 aaKnown RBP16.61■□□□□ 0.25
COL17A1-202ENST00000369733 RNF149Q8NC42 400 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 CENPTQ96BT3 561 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 MAP2P11137 1827 aaKnown RBP16.61■□□□□ 0.25
COL17A1-202ENST00000369733 CCDC78A2IDD5 438 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 FKBP6O75344 327 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 GRAP2O75791 330 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 CDC25CP30307 473 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 SULT1E1P49888 294 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 SUPT20HL1Q3ZLR7 823 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 TTC33Q6PID6 262 aaPredicted RBP16.61■□□□□ 0.25
COL17A1-202ENST00000369733 IFNEQ86WN2 208 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 ULK4Q96C45 1275 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 SARS2Q9NP81 518 aaKnown RBP16.61■□□□□ 0.25
COL17A1-202ENST00000369733 METTL5Q9NRN9 209 aaKnown RBP16.61■□□□□ 0.25
COL17A1-202ENST00000369733 STRNO43815 780 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 PDAP1Q13442 181 aaKnown RBP16.61■□□□□ 0.25
COL17A1-202ENST00000369733 CCNG2Q16589 344 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 TRMT5Q32P41 509 aaKnown RBP16.61■□□□□ 0.25
COL17A1-202ENST00000369733 PRUNE1Q86TP1 453 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 AGAP11Q8TF27 550 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 VPS33BQ9H267 617 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 TCRBV5S4A2TA0A5A2 114 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 DFFAO00273 331 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 NTSR2O95665 410 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 CLPTM1O96005 669 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 KCNA2P16389 499 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 UGP2Q16851 508 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 SWT1Q5T5J6 900 aaKnown RBP16.61■□□□□ 0.25
COL17A1-202ENST00000369733 MREGQ8N565 214 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 KIF12Q96FN5 646 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 ELMO2Q96JJ3 720 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 RIT2Q99578 217 aa16.61■□□□□ 0.25
COL17A1-202ENST00000369733 ARHGEF37A1IGU5 675 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 GTPBP10A4D1E9 387 aaKnown RBP16.6■□□□□ 0.25
COL17A1-202ENST00000369733 PIK3CDO00329 1044 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 ARPP19P56211 112 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 ADRM1Q16186 407 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 EFHC1Q5JVL4 640 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 BEGAINQ9BUH8 593 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 GID8Q9NWU2 228 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 BLOC1S6Q9UL45 172 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 XKR3Q5GH77 459 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 MRGBPQ9NV56 204 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 PCDHGC5Q9Y5F6 944 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 KIF20BQ96Q89 1820 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 UBA6A0AVT1 1052 aaPredicted RBP16.6■□□□□ 0.25
COL17A1-202ENST00000369733 RCCD1A6NED2 376 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 STIP1P31948 543 aaKnown RBP16.6■□□□□ 0.25
COL17A1-202ENST00000369733 TPI1P60174 286 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 WDR59Q6PJI9 974 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 MXRA8Q9BRK3 442 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 C3orf70A6NLC5 250 aaPredicted RBP16.6■□□□□ 0.25
COL17A1-202ENST00000369733 AP3B1O00203 1094 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 POLRMTO00411 1230 aaKnown RBP16.6■□□□□ 0.25
COL17A1-202ENST00000369733 TBC1D4O60343 1298 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 GFAPP14136 432 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 GPD1P21695 349 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 AMPD2Q01433 879 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 FAXCQ5TGI0 409 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 PCNX4Q63HM2 1172 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 LAYNQ6UX15 382 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 PTPRN2Q92932 1015 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 FRMD8P1Q9BZ68 369 aaPredicted RBP16.6■□□□□ 0.25
COL17A1-202ENST00000369733 ZC4H2Q9NQZ6 224 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 SEPT3Q9UH03 358 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 SIK3Q9Y2K2 1263 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 PIK3C2BO00750 1634 aa16.6■□□□□ 0.25
COL17A1-202ENST00000369733 PSMD7P51665 324 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 WLSQ5T9L3 541 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 C4orf22Q6V702 233 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 OLA1Q9NTK5 396 aaKnown RBP16.59■□□□□ 0.25
COL17A1-202ENST00000369733 HOXC10Q9NYD6 342 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 TBX20Q9UMR3 447 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 VWDEQ8N2E2 1590 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 GLRA3O75311 464 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 PSMC3P17980 439 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 SERPINB5P36952 375 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 CUL2Q13617 745 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 TFDP3Q5H9I0 405 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 KDELC2Q7Z4H8 507 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 GPR141Q7Z602 305 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 SLC47A2Q86VL8 602 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 DDHD1Q8NEL9 900 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 SNX19Q92543 992 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 FBXO40Q9UH90 709 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 E5RI56 91 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 OPLAHO14841 1288 aa16.59■□□□□ 0.25
COL17A1-202ENST00000369733 RPS6P62753 249 aaKnown RBP16.59■□□□□ 0.25
COL17A1-202ENST00000369733 ACBD5Q5T8D3 534 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms