RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 AVENQ9NQS1 362 aaPredicted RBP24.06■■□□□ 1.44
CDX1-201ENST00000231656 CNOT8Q9UFF9 292 aaKnown RBP24.06■■□□□ 1.44
CDX1-201ENST00000231656 ITGA11Q9UKX5 1188 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 MIF4GDA9UHW6 222 aaKnown RBP24.05■■□□□ 1.44
CDX1-201ENST00000231656 TNFRSF8P28908 595 aa24.05■■□□□ 1.44
CDX1-201ENST00000231656 CYP2C18P33260 490 aa24.05■■□□□ 1.44
CDX1-201ENST00000231656 MESDQ14696 234 aa24.05■■□□□ 1.44
CDX1-201ENST00000231656 DBF4BQ8NFT6 615 aa24.05■■□□□ 1.44
CDX1-201ENST00000231656 UBE2Q2Q8WVN8 375 aa24.05■■□□□ 1.44
CDX1-201ENST00000231656 TMEM39AQ9NV64 488 aa24.05■■□□□ 1.44
CDX1-201ENST00000231656 TMEM110-MUSTN1A8MSY1 372 aa24.04■■□□□ 1.44
CDX1-201ENST00000231656 CLSTN1O94985 981 aa24.04■■□□□ 1.44
CDX1-201ENST00000231656 CFHP08603 1231 aa24.04■■□□□ 1.44
CDX1-201ENST00000231656 CLTBP09497 229 aa24.04■■□□□ 1.44
CDX1-201ENST00000231656 SKIP12755 728 aa24.04■■□□□ 1.44
CDX1-201ENST00000231656 CASP8Q14790 479 aa24.04■■□□□ 1.44
CDX1-201ENST00000231656 NAA35Q5VZE5 725 aa24.04■■□□□ 1.44
CDX1-201ENST00000231656 SMYD5Q6GMV2 418 aa24.04■■□□□ 1.44
CDX1-201ENST00000231656 LINC01599Q8WXQ3 324 aa24.04■■□□□ 1.44
CDX1-201ENST00000231656 ALG3Q92685 438 aa24.04■■□□□ 1.44
CDX1-201ENST00000231656 C18orf25Q96B23 403 aaPredicted RBP24.04■■□□□ 1.44
CDX1-201ENST00000231656 TSPYL2Q9H2G4 693 aaPredicted RBP24.04■■□□□ 1.44
CDX1-201ENST00000231656 TUBGCP4Q9UGJ1 667 aa24.04■■□□□ 1.44
CDX1-201ENST00000231656 UBQLN1Q9UMX0 589 aaKnown RBP24.04■■□□□ 1.44
CDX1-201ENST00000231656 GIT1Q9Y2X7 761 aa24.04■■□□□ 1.44
CDX1-201ENST00000231656 C9IYK1 514 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 PTGESO14684 152 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 MYBL1P10243 752 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 COMTP21964 271 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 POLR2BP30876 1174 aaKnown RBP24.03■■□□□ 1.44
CDX1-201ENST00000231656 ZNF699Q32M78 642 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 SLC24A5Q71RS6 500 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 ECHDC2Q86YB7 292 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 GSPT2Q8IYD1 628 aaKnown RBP24.03■■□□□ 1.44
CDX1-201ENST00000231656 BEST2Q8NFU1 509 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 AENQ8WTP8 325 aaKnown RBP24.03■■□□□ 1.44
CDX1-201ENST00000231656 CPA5Q8WXQ8 436 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 CD101Q93033 1021 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 CYFIP2Q96F07 1278 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 TRIM11Q96F44 468 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 HINFPQ9BQA5 517 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 SCN1AP35498 2009 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 PARNO95453 639 aaKnown RBP24.03■■□□□ 1.44
CDX1-201ENST00000231656 EN2P19622 333 aaPredicted RBP24.03■■□□□ 1.44
CDX1-201ENST00000231656 IBSPP21815 317 aaPredicted RBP24.03■■□□□ 1.44
CDX1-201ENST00000231656 MLH1P40692 756 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 NOMO3P69849 1222 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 MON1BQ7L1V2 547 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 RNF169Q8NCN4 708 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 GSTCDQ8NEC7 633 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 SEPT8Q92599 483 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 PGBD4Q96DM1 585 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 BTBD6Q96KE9 485 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 GAD1Q99259 594 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 ZSWIM1Q9BR11 485 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 GDF3Q9NR23 364 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 AGAP1Q9UPQ3 857 aa24.03■■□□□ 1.44
CDX1-201ENST00000231656 ARL5CA6NH57 179 aa24.02■■□□□ 1.44
CDX1-201ENST00000231656 CCDC188H7C350 402 aa24.02■■□□□ 1.44
CDX1-201ENST00000231656 THAP12O43422 761 aa24.02■■□□□ 1.44
CDX1-201ENST00000231656 CXCL10P02778 98 aa24.02■■□□□ 1.44
CDX1-201ENST00000231656 GLI1P08151 1106 aa24.02■■□□□ 1.44
CDX1-201ENST00000231656 ASPAP45381 313 aa24.02■■□□□ 1.44
CDX1-201ENST00000231656 RBP5P82980 135 aa24.02■■□□□ 1.44
CDX1-201ENST00000231656 ZNF598Q86UK7 904 aaKnown RBP24.02■■□□□ 1.44
CDX1-201ENST00000231656 KRT35Q92764 455 aa24.02■■□□□ 1.44
CDX1-201ENST00000231656 RNPC3Q96LT9 517 aaKnown RBP24.02■■□□□ 1.44
CDX1-201ENST00000231656 AP1M1Q9BXS5 423 aa24.02■■□□□ 1.44
CDX1-201ENST00000231656 CISHQ9NSE2 258 aa24.02■■□□□ 1.44
CDX1-201ENST00000231656 KRIT1O00522 736 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 XPOTO43592 962 aaKnown RBP24.01■■□□□ 1.43
CDX1-201ENST00000231656 ATICP31939 592 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 NSFP46459 744 aaKnown RBP24.01■■□□□ 1.43
CDX1-201ENST00000231656 FAM189BP81408 668 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 UBE2Q1Q7Z7E8 422 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 KLHL7Q8IXQ5 586 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 UBL4BQ8N7F7 174 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 APBB2Q92870 758 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 PPP1R10Q96QC0 940 aaKnown RBP24.01■■□□□ 1.43
CDX1-201ENST00000231656 RSAD1Q9HA92 442 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 RAD51CO43502 376 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 HEXIM1O94992 359 aaKnown RBP24.01■■□□□ 1.43
CDX1-201ENST00000231656 RRM1P23921 792 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 MARCKSL1P49006 195 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 PEX5P50542 639 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 AFF1P51825 1210 aaKnown RBP24.01■■□□□ 1.43
CDX1-201ENST00000231656 PHF13Q86YI8 300 aaPredicted RBP24.01■■□□□ 1.43
CDX1-201ENST00000231656 CPNE8Q86YQ8 564 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 PASD1Q8IV76 773 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 ZNF606Q8WXB4 792 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 VRTNQ9H8Y1 702 aa24.01■■□□□ 1.43
CDX1-201ENST00000231656 EOMESO95936 686 aa24■■□□□ 1.43
CDX1-201ENST00000231656 FGGP02679 453 aa24■■□□□ 1.43
CDX1-201ENST00000231656 CD58P19256 250 aa24■■□□□ 1.43
CDX1-201ENST00000231656 CYP3A5P20815 502 aa24■■□□□ 1.43
CDX1-201ENST00000231656 CTNNA2P26232 953 aa24■■□□□ 1.43
CDX1-201ENST00000231656 SOX4Q06945 474 aaPredicted RBP24■■□□□ 1.43
CDX1-201ENST00000231656 SMC1AQ14683 1233 aaKnown RBP24■■□□□ 1.43
CDX1-201ENST00000231656 TCTN1Q2MV58 587 aa24■■□□□ 1.43
CDX1-201ENST00000231656 FAM43BQ6ZT52 329 aaPredicted RBP24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms