RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 INTS2Q9H0H0 1204 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 PAK6Q9NQU5 681 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 PCDHB2Q9Y5E7 798 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 TET1Q8NFU7 2136 aa9.23□□□□□ -0.93
LIMCH1-209ENST00000509277 LRRC53A6NM62 1247 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 PDE2AO00408 941 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 GPR182O15218 404 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 HLA-DRAP01903 254 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 FGFR1P11362 822 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 HOXD8P13378 290 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 ITGA4P13612 1032 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 GARTP22102 1010 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 POLR2BP30876 1174 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 SLCO1A2P46721 670 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 SCNN1GP51170 649 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 KRT71Q3SY84 523 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 IQCEQ6IPM2 695 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 CCSAPQ6IQ19 270 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 SLC39A5Q6ZMH5 540 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 ARL10Q8N8L6 244 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 HNRNPLLQ8WVV9 542 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 KRT12Q99456 494 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 SH3GL3Q99963 347 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 C11orf49Q9H6J7 331 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 C1orf112Q9NSG2 853 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 MCM8Q9UJA3 840 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 DNAJC12Q9UKB3 198 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 NUB1Q9Y5A7 615 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 TIMM13Q9Y5L4 95 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 UBE4BO95155 1302 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 GYPCP04921 128 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 PLEKP08567 350 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 CARSP49589 748 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 GATMP50440 423 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 MYL6P60660 151 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 IRX1P78414 480 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 BFSP2Q13515 415 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 LPIN1Q14693 890 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 TMEM132DQ14C87 1099 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 LRRC26Q2I0M4 334 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 SPRED3Q2MJR0 410 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 KRT39Q6A163 491 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 ZPBP2Q6X784 338 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 MSANTD4Q8NCY6 345 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 NOVA2Q9UNW9 492 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 TNFSF13BQ9Y275 285 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 IPPQ9Y573 584 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 LRRC37A2A6NM11 1700 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 NT5C1B-RDH14C9J2C7 533 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 HEXIM1O94992 359 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 NDUFA10O95299 355 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 HOXA11P31270 313 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 CDH8P55286 799 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 NCOA4Q13772 614 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 TRADDQ15628 312 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 DUOXA2Q1HG44 320 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 TTMPQ5BVD1 217 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 CCNI2Q6ZMN8 369 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 APTXQ7Z2E3 356 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 DDX42Q86XP3 938 aaKnown RBP eCLIP9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 GLYCTKQ8IVS8 523 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 SEMA4DQ92854 862 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 HVCN1Q96D96 273 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 LACRTQ9GZZ8 138 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 DPH5Q9H2P9 285 aa9.22□□□□□ -0.93
LIMCH1-209ENST00000509277 AGPSO00116 658 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 MGEA5O60502 916 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 ANP32DO95626 131 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 CST3P01034 146 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 CTNNA1P35221 906 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 FBXO47Q5MNV8 452 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 CDCA2Q69YH5 1023 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 CRELD2Q6UXH1 353 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 TMTC1Q8IUR5 882 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 ARHGEF19Q8IW93 802 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 FBXL13Q8NEE6 735 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 NT5C1BQ96P26 610 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 FAM193BQ96PV7 902 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 TSC22D3Q99576 134 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 FAM105AQ9NUU6 356 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 TUBGCP4Q9UGJ1 667 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 RAB21Q9UL25 225 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 MTUS1Q9ULD2 1270 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 SNX9Q9Y5X1 595 aa9.21□□□□□ -0.93
LIMCH1-209ENST00000509277 FTCDO95954 541 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 FAM153BP0C7A2 387 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 CSF2RAP15509 400 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 PON1P27169 355 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 KCNMA1Q12791 1236 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 PTK7Q13308 1070 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 ZNF699Q32M78 642 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 FAM153CQ494X1 144 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 TDRD10Q5VZ19 366 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 TSHZ1Q6ZSZ6 1077 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 TRAPPC11Q7Z392 1133 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 APBB1IPQ7Z5R6 666 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 PASD1Q8IV76 773 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 MYCBPAPQ8TBZ2 947 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 HELQQ8TDG4 1101 aa9.21□□□□□ -0.94
LIMCH1-209ENST00000509277 ZNF516Q92618 1163 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms