RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 ARMCX2Q7L311 632 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 MAMDC2Q7Z304 686 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 FBXO11Q86XK2 927 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 MAP4K3Q8IVH8 894 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 FBXO16Q8IX29 292 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 ABRAQ8N0Z2 381 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 ARL10Q8N8L6 244 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 FAM133AQ8N9E0 248 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 FANCBQ8NB91 859 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 SLC30A5Q8TAD4 765 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 GOLGA5Q8TBA6 731 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 GPT2Q8TD30 523 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 U2AF1L4Q8WU68 220 aaKnown RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 SLC5A5Q92911 643 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 HPS3Q969F9 1004 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 NXPE3Q969Y0 559 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 GTPBP3Q969Y2 492 aaKnown RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 TBC1D31Q96DN5 1066 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 DEFB118Q96PH6 123 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 PPP1R16BQ96T49 567 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 SPZ1Q9BXG8 430 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 LMAN2LQ9H0V9 348 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 TRIT1Q9H3H1 467 aaKnown RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 RIOX1Q9H6W3 641 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 C11orf16Q9NQ32 467 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 ITM2CQ9NQX7 267 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 PDRG1Q9NUG6 133 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 CYP39A1Q9NYL5 469 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 MARK1Q9P0L2 795 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 COL20A1Q9P218 1284 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 PPARGC1AQ9UBK2 798 aaKnown RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 RRP15Q9Y3B9 282 aaKnown RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 TRAF6Q9Y4K3 522 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 PCDHA9Q9Y5H5 950 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 PCDHA1Q9Y5I3 950 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 KIAA0100Q14667 2235 aaKnown RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 PFASO15067 1338 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 ABCB11O95342 1321 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 LRRC37A2A6NM11 1700 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 DNAH12Q6ZR08 3092 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 PLXNA1Q9UIW2 1896 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 TMCO5BA8MYB1 307 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 WDR64B1ANS9 1081 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 B4E171 279 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 RNF225M0QZC1 329 aaPredicted RBP4.95□□□□□ -1.62
SF3B1-202ENST00000409915 TNRC18O15417 2968 aaPredicted RBP4.95□□□□□ -1.62
SF3B1-202ENST00000409915 ADCY6O43306 1168 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 TMEM127O75204 238 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 TUSC2O75896 110 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 LARGE1O95461 756 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 SNAI1O95863 264 aaPredicted RBP4.95□□□□□ -1.62
SF3B1-202ENST00000409915 TBX18O95935 607 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 IVLP07476 585 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 CALM1P0DP23 149 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 CALM2P0DP24 149 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 CALM3P0DP25 149 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 RARAP10276 462 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 RAC2P15153 192 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 SELPP16109 830 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 PSMA3P25788 255 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 PEX2P28328 305 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 PDIA3P30101 505 aaKnown RBP4.95□□□□□ -1.62
SF3B1-202ENST00000409915 GSK3AP49840 483 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 PMS1P54277 932 aaKnown RBP4.95□□□□□ -1.62
SF3B1-202ENST00000409915 SCAND1P57086 179 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 CORO7P57737 925 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 NTRK3Q16288 839 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 UBE2SQ16763 222 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 ZSCAN23Q3MJ62 389 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 HSP90B2PQ58FF3 399 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 WDR44Q5JSH3 913 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 TEX35Q5T0J7 233 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 TMEM63BQ5T3F8 832 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 GJC2Q5T442 439 aaPredicted RBP4.95□□□□□ -1.62
SF3B1-202ENST00000409915 OLFML2BQ68BL8 750 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 FOXR1Q6PIV2 292 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 ADAMTSL4Q6UY14 1074 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 RNF207Q6ZRF8 634 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 HEATR3Q7Z4Q2 680 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 UBE2Q1Q7Z7E8 422 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 LCA5Q86VQ0 697 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 CMIPQ8IY22 773 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 EFCAB13Q8IY85 973 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 COLGALT2Q8IYK4 626 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 MIER2Q8N344 545 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 TMEM151AQ8N4L1 468 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 CAMKK1Q8N5S9 505 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 CCDC26Q8TAB7 109 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 PHKBQ93100 1093 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 MIEF2Q96C03 454 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 RRP36Q96EU6 259 aaKnown RBP4.95□□□□□ -1.62
SF3B1-202ENST00000409915 AGAP3Q96P47 875 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 MAP3K14Q99558 947 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 TTLL2Q9BWV7 592 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 AMNQ9BXJ7 453 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 AGXT2Q9BYV1 514 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 C22orf23Q9BZE7 217 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 TM6SF1Q9BZW5 370 aa4.95□□□□□ -1.62
SF3B1-202ENST00000409915 XPO4Q9C0E2 1151 aaKnown RBP4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms