RNA–Protein interactions for RNA: ENST00000394888.8

CPSF7-202, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

APPRIS P4 TSL 2 BASIC

Gene CPSF7, Length 3,650 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-202ENST00000394888 SEPT1Q8WYJ6 367 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 KATNBL1Q9H079 304 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 RAB6CQ9H0N0 254 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 CNOT10Q9H9A5 744 aaKnown RBP16.31■□□□□ 0.2
CPSF7-202ENST00000394888 NME7Q9Y5B8 376 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 GSCP56915 257 aaPredicted RBP16.31■□□□□ 0.2
CPSF7-202ENST00000394888 GAD2Q05329 585 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 ACTN3Q08043 901 aaPredicted RBP16.31■□□□□ 0.2
CPSF7-202ENST00000394888 LACTB2Q53H82 288 aaPredicted RBP16.31■□□□□ 0.2
CPSF7-202ENST00000394888 CDR2LQ86X02 465 aaPredicted RBP16.31■□□□□ 0.2
CPSF7-202ENST00000394888 ATL2Q8NHH9 583 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 BBXQ8WY36 941 aaPredicted RBP16.31■□□□□ 0.2
CPSF7-202ENST00000394888 RNPEPQ9H4A4 650 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 hCG_1818297A0A087WSY0 165 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 GPR25O00155 361 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 OGTO15294 1046 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 B4GALT4O60513 344 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 DDNO94850 711 aaPredicted RBP16.31■□□□□ 0.2
CPSF7-202ENST00000394888 WEE2P0C1S8 567 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 RAP1GAPP47736 663 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 NFX1Q12986 1120 aaKnown RBP16.31■□□□□ 0.2
CPSF7-202ENST00000394888 KYNUQ16719 465 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 B4GALNT4Q76KP1 1039 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 HOOK3Q86VS8 718 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 JOSD2Q8TAC2 188 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 PPM1EQ8WY54 764 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 ZNF668Q96K58 619 aaPredicted RBP16.31■□□□□ 0.2
CPSF7-202ENST00000394888 TSPYL1Q9H0U9 437 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 PARVAQ9NVD7 372 aa16.31■□□□□ 0.2
CPSF7-202ENST00000394888 C22orf31O95567 290 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 ACSL3O95573 720 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 RAD23BP54727 409 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 C6orf118Q5T5N4 469 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 CYP4A22Q5TCH4 519 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 MCEEQ96PE7 176 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 PRMT1Q99873 361 aaKnown RBP16.3■□□□□ 0.2
CPSF7-202ENST00000394888 RASSF9O75901 435 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 ANKRD20A8PQ5CZ79 823 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 IER5Q5VY09 327 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 FBXO16Q8IX29 292 aaPredicted RBP16.3■□□□□ 0.2
CPSF7-202ENST00000394888 LRRC34Q8IZ02 419 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 ALLCQ8N6M5 410 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 C1orf127Q8N9H9 656 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 MAML1Q92585 1016 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 ROPN1BQ9BZX4 212 aaPredicted RBP16.3■□□□□ 0.2
CPSF7-202ENST00000394888 ROPN1Q9HAT0 212 aaPredicted RBP16.3■□□□□ 0.2
CPSF7-202ENST00000394888 PPP1R1BQ9UD71 204 aaPredicted RBP16.3■□□□□ 0.2
CPSF7-202ENST00000394888 SMIM23A6NLE4 172 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 LSM8O95777 96 aaKnown RBP16.3■□□□□ 0.2
CPSF7-202ENST00000394888 PRKCBP05771 671 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 RNF149Q8NC42 400 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 CHMP6Q96FZ7 201 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 NIF3L1Q9GZT8 377 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 CDT1Q9H211 546 aa16.3■□□□□ 0.2
CPSF7-202ENST00000394888 FARP1Q9Y4F1 1045 aaPredicted RBP16.3■□□□□ 0.2
CPSF7-202ENST00000394888 HARSP12081 509 aaKnown RBP16.29■□□□□ 0.2
CPSF7-202ENST00000394888 IFT88Q13099 833 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 NEDD9Q14511 834 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 R3HDM1Q15032 1099 aaKnown RBP16.29■□□□□ 0.2
CPSF7-202ENST00000394888 AEBP2Q6ZN18 517 aaPredicted RBP16.29■□□□□ 0.2
CPSF7-202ENST00000394888 SLC35B2Q8TB61 432 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 TRAIPQ9BWF2 469 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 MRPL4Q9BYD3 311 aaKnown RBP16.29■□□□□ 0.2
CPSF7-202ENST00000394888 GJD2Q9UKL4 321 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 GRID1Q9ULK0 1009 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 GDF10P55107 478 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 LRRC38Q5VT99 294 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 SPOCD1Q6ZMY3 1216 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 SPATS2Q86XZ4 545 aaKnown RBP16.29■□□□□ 0.2
CPSF7-202ENST00000394888 CCDC13Q8IYE1 715 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 FAM107BQ9H098 131 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 ELP3Q9H9T3 547 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 RASGRF2O14827 1237 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 NFICP08651 508 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 SRGAP2CP0DJJ0 459 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 IFFO1Q0D2I5 559 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 PPP1R7Q15435 360 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 ZNF394Q53GI3 561 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 ZCCHC9Q8N567 271 aaKnown RBP16.29■□□□□ 0.2
CPSF7-202ENST00000394888 SLC4A11Q8NBS3 891 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 SERPINB12Q96P63 405 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 CPXM1Q96SM3 734 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 PPME1Q9Y570 386 aa16.29■□□□□ 0.2
CPSF7-202ENST00000394888 ASAP2O43150 1006 aa16.28■□□□□ 0.2
CPSF7-202ENST00000394888 LRCH4O75427 683 aa16.28■□□□□ 0.2
CPSF7-202ENST00000394888 CD48P09326 243 aa16.28■□□□□ 0.2
CPSF7-202ENST00000394888 RFC1P35251 1148 aaPredicted RBP16.28■□□□□ 0.2
CPSF7-202ENST00000394888 EFNA5P52803 228 aa16.28■□□□□ 0.2
CPSF7-202ENST00000394888 RNASEH2BQ5TBB1 312 aaKnown RBP16.28■□□□□ 0.2
CPSF7-202ENST00000394888 MPZL3Q6UWV2 235 aa16.28■□□□□ 0.2
CPSF7-202ENST00000394888 NCAPG2Q86XI2 1143 aa16.28■□□□□ 0.2
CPSF7-202ENST00000394888 MTRF1LQ9UGC7 380 aaKnown RBP16.28■□□□□ 0.2
CPSF7-202ENST00000394888 ERBB2P04626 1255 aa16.28■□□□□ 0.2
CPSF7-202ENST00000394888 ARHGAP1Q07960 439 aa16.28■□□□□ 0.2
CPSF7-202ENST00000394888 TAF5Q15542 800 aa16.28■□□□□ 0.2
CPSF7-202ENST00000394888 TAPT1Q6NXT6 567 aa16.28■□□□□ 0.2
CPSF7-202ENST00000394888 NFKBIZQ9BYH8 718 aa16.28■□□□□ 0.2
CPSF7-202ENST00000394888 KCNG1Q9UIX4 513 aa16.28■□□□□ 0.2
CPSF7-202ENST00000394888 SCINQ9Y6U3 715 aa16.28■□□□□ 0.2
CPSF7-202ENST00000394888 ACKR2O00590 384 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms