RNA–Protein interactions for RNA: ENST00000368021.7

USF1-203, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,807 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-203ENST00000368021 SKIP12755 728 aa12.87□□□□□ -0.35
USF1-203ENST00000368021 TMEM240Q5SV17 173 aa12.87□□□□□ -0.35
USF1-203ENST00000368021 SLC35F6Q8N357 371 aa12.87□□□□□ -0.35
USF1-203ENST00000368021 TET1Q8NFU7 2136 aa12.87□□□□□ -0.35
USF1-203ENST00000368021 RNPC3Q96LT9 517 aaKnown RBP12.87□□□□□ -0.35
USF1-203ENST00000368021 PACSIN1Q9BY11 444 aa12.87□□□□□ -0.35
USF1-203ENST00000368021 CXCL16Q9H2A7 254 aa12.87□□□□□ -0.35
USF1-203ENST00000368021 ACP6Q9NPH0 428 aa12.87□□□□□ -0.35
USF1-203ENST00000368021 GIT1Q9Y2X7 761 aa12.87□□□□□ -0.35
USF1-203ENST00000368021 CHD7Q9P2D1 2997 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 SCN1AP35498 2009 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 ANKRD62A6NC57 917 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 ZBBXA8MT70 800 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 RTN2O75298 545 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 TACC1O75410 805 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 FGBP02675 491 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 IVLP07476 585 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 MMEP08473 750 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 TMEM253P0C7T8 217 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 ITGA4P13612 1032 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 GNA15P30679 374 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 GUCY2FP51841 1108 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 HABP4Q5JVS0 413 aaKnown RBP12.86□□□□□ -0.35
USF1-203ENST00000368021 GLRA4Q5JXX5 417 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 PALB2Q86YC2 1186 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 NOX5Q96PH1 765 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 ALS2CR12Q96Q35 445 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 SEPT11Q9NVA2 429 aaKnown RBP12.86□□□□□ -0.35
USF1-203ENST00000368021 CXXC1Q9P0U4 656 aaPredicted RBP12.86□□□□□ -0.35
USF1-203ENST00000368021 NXF1Q9UBU9 619 aaKnown RBP12.86□□□□□ -0.35
USF1-203ENST00000368021 TUBGCP4Q9UGJ1 667 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 RSPH14Q9UHP6 348 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 MYH10P35580 1976 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 COL6A3P12111 3177 aa12.86□□□□□ -0.35
USF1-203ENST00000368021 CTAGE9A4FU28 777 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 MGEA5O60502 916 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 WEE2P0C1S8 567 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 ATF7P17544 494 aaPredicted RBP12.85□□□□□ -0.35
USF1-203ENST00000368021 PNPLA4P41247 253 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 GALCP54803 685 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 C9orf57Q5W0N0 161 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 TRIM72Q6ZMU5 477 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 C18orf25Q96B23 403 aaPredicted RBP12.85□□□□□ -0.35
USF1-203ENST00000368021 PPP1R10Q96QC0 940 aaKnown RBP12.85□□□□□ -0.35
USF1-203ENST00000368021 PCDHB18PQ96TA0 734 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 L2HGDHQ9H9P8 463 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 MED4Q9NPJ6 270 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 SLC38A7Q9NVC3 462 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 DONSONQ9NYP3 566 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 KLK14Q9P0G3 267 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 SALL4Q9UJQ4 1053 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 POLIQ9UNA4 740 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 PIRO00625 290 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 PTGESO14684 152 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 PAEPP09466 180 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 CD58P19256 250 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 LRPAP1P30533 357 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 TNNC1P63316 161 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 INCA1Q0VD86 236 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 IFI16Q16666 785 aaKnown RBP12.85□□□□□ -0.35
USF1-203ENST00000368021 SWT1Q5T5J6 900 aaKnown RBP12.85□□□□□ -0.35
USF1-203ENST00000368021 PPP1R2P3Q6NXS1 205 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 PSRC1Q6PGN9 363 aaPredicted RBP12.85□□□□□ -0.35
USF1-203ENST00000368021 SCARA5Q6ZMJ2 495 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 CNPY4Q8N129 248 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 CTNNBL1Q8WYA6 563 aaPredicted RBP12.85□□□□□ -0.35
USF1-203ENST00000368021 CALR3Q96L12 384 aaKnown RBP12.85□□□□□ -0.35
USF1-203ENST00000368021 ZNF560Q96MR9 790 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 NAPGQ99747 312 aaPredicted RBP12.85□□□□□ -0.35
USF1-203ENST00000368021 ADAM2Q99965 735 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 UBN1Q9NPG3 1134 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 ARGLU1Q9NWB6 273 aaPredicted RBP12.85□□□□□ -0.35
USF1-203ENST00000368021 PSD3Q9NYI0 1048 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 TAS2R14Q9NYV8 317 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 PCDHGC5Q9Y5F6 944 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 CAPN6Q9Y6Q1 641 aa12.85□□□□□ -0.35
USF1-203ENST00000368021 CHD9Q3L8U1 2897 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 CILPO75339 1184 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 FTLP02792 175 aaPredicted RBP12.84□□□□□ -0.35
USF1-203ENST00000368021 UNGP13051 313 aaPredicted RBP12.84□□□□□ -0.35
USF1-203ENST00000368021 TUBB2AQ13885 445 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 TCEAL1Q15170 157 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 CLEC16AQ2KHT3 1053 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 TCTN1Q2MV58 587 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 AGMOQ6ZNB7 445 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 TMEM130Q8N3G9 435 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 GSTCDQ8NEC7 633 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 DBF4BQ8NFT6 615 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 ZNF606Q8WXB4 792 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 RFFLQ8WZ73 363 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 PGBD4Q96DM1 585 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 TUBB2BQ9BVA1 445 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 FTHL17Q9BXU8 183 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 FAM107BQ9H098 131 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 SMYD3Q9H7B4 428 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 RGS18Q9NS28 235 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 BARX2Q9UMQ3 279 aaPredicted RBP12.84□□□□□ -0.35
USF1-203ENST00000368021 JRKLQ9Y4A0 524 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 NCANO14594 1321 aa12.84□□□□□ -0.35
USF1-203ENST00000368021 PRUNE2Q8WUY3 3088 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms