RNA–Protein interactions for RNA: YGR009C

SEC9, Transcript of t-SNARE protein required for secretory vesicle-plasma membrane fusion, yeast

Gene SEC9, Length 1,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC9	YGR009C	SEC7	P11075	2009 aa	Known RBP	4.24	□□□□□ -1.73
SEC9	YGR009C	MLP2	P40457	1679 aa		4.24	□□□□□ -1.73
SEC9	YGR009C	NTE1	Q04958	1679 aa		4.24	□□□□□ -1.73
SEC9	YGR009C	POL1	P13382	1468 aa		4.24	□□□□□ -1.73
SEC9	YGR009C	COX1	P00401	534 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	COX5A	P00424	153 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	MSW1	P04803	379 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	OPI3	P05375	206 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	RPB3	P16370	318 aa	Known RBP	4.23	□□□□□ -1.73
SEC9	YGR009C	COX13	P32799	129 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	MED6	P38782	295 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	RSM10	Q03201	203 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	BET5	Q03630	159 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	ARF2	P19146	181 aa	Known RBP	4.23	□□□□□ -1.73
SEC9	YGR009C	TMA19	P35691	167 aa	Known RBP	4.23	□□□□□ -1.73
SEC9	YGR009C	FMP46	P36141	133 aa	Known RBP	4.23	□□□□□ -1.73
SEC9	YGR009C	MRPL11	P36521	249 aa	Predicted RBP	4.23	□□□□□ -1.73
SEC9	YGR009C	MBB1	P39534	108 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	SYS1	P41544	203 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	ATG18	P43601	500 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	BXI1	P48558	297 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	YNL033W	P53964	284 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	YNL019C	P53975	284 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	YMR103C	Q04436	120 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	LOA1	Q06508	300 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	YDL009C	Q12210	107 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	YPS3	Q12303	508 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	RKR1	Q04781	1562 aa		4.23	□□□□□ -1.73
SEC9	YGR009C	MDM10	P18409	493 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	YMC1	P32331	307 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	ZRT1	P32804	376 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	SWM2	P40342	146 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	PRM5	P40476	318 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	YFL065C	P43539	102 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	ARP3	P47117	449 aa	Known RBP	4.22	□□□□□ -1.73
SEC9	YGR009C	YLR224W	Q05947	369 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	YPR098C	Q06089	161 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	YPR203W	Q08994	102 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	YBR255C-A	Q3E776	120 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	YNR034W-A	Q3E841	98 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	GCN2	P15442	1659 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	HIR3	P47171	1648 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	MSI1	P13712	422 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	RPL30	P14120	105 aa	Known RBP	4.22	□□□□□ -1.73
SEC9	YGR009C	MRPL20	P22354	195 aa	Predicted RBP	4.22	□□□□□ -1.73
SEC9	YGR009C	GAR1	P28007	205 aa	Known RBP	4.22	□□□□□ -1.73
SEC9	YGR009C	ATS1	P31386	333 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	YKL102C	P34249	101 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	SDH4	P37298	181 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	ATG8	P38182	117 aa	RIP-Chip data	4.22	□□□□□ -1.73	not detected
SEC9	YGR009C	SPL2	P38839	148 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	BAT2	P47176	376 aa	Known RBP	4.22	□□□□□ -1.73
SEC9	YGR009C	MST27	P53176	234 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	PET191	Q02772	108 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	MCA1	Q08601	432 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	YDR029W	Q12111	104 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	YPL245W	Q12179	454 aa	Known RBP	4.22	□□□□□ -1.73
SEC9	YGR009C	IZH2	Q12442	317 aa		4.22	□□□□□ -1.73
SEC9	YGR009C	SNQ2	P32568	1501 aa	Known RBP	4.22	□□□□□ -1.73
SEC9	YGR009C	TY1B-NL2	Q99337	1749 aa	Known RBP	4.21	□□□□□ -1.73
SEC9	YGR009C	RPS31	P05759	152 aa	Known RBP	4.21	□□□□□ -1.74
SEC9	YGR009C	YBR063C	P38083	404 aa		4.21	□□□□□ -1.74
SEC9	YGR009C	MST28	P39552	234 aa		4.21	□□□□□ -1.74
SEC9	YGR009C	ISC1	P40015	477 aa	Known RBP	4.21	□□□□□ -1.74
SEC9	YGR009C	AVT7	P40501	490 aa		4.21	□□□□□ -1.74
SEC9	YGR009C	AIM25	P47140	327 aa		4.21	□□□□□ -1.74
SEC9	YGR009C	GEP7	P53171	287 aa		4.21	□□□□□ -1.74
SEC9	YGR009C	KEI1	Q06346	221 aa		4.21	□□□□□ -1.74
SEC9	YGR009C	IES4	Q08561	116 aa		4.21	□□□□□ -1.74
SEC9	YGR009C	NAT5	Q08689	176 aa		4.21	□□□□□ -1.74
SEC9	YGR009C	FIT3	Q08907	204 aa		4.21	□□□□□ -1.74
SEC9	YGR009C	CHC1	P22137	1653 aa	Known RBP	4.21	□□□□□ -1.74
SEC9	YGR009C	TY1A-H	P0C2I4	478 aa	Known RBP	4.2	□□□□□ -1.74
SEC9	YGR009C	SNF4	P12904	322 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	SPO13	P23624	291 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	YHR140W	P38842	239 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	ASA1	Q06822	443 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	YDL218W	Q07629	317 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	DGA1	Q08650	418 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	YPL162C	Q12042	273 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	RFM1	Q12192	310 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	YPR064W	Q12492	139 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	DDP1	Q99321	188 aa	Known RBP	4.2	□□□□□ -1.74
SEC9	YGR009C	BPT1	P14772	1559 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	MRS3	P10566	314 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	ARF1	P11076	181 aa	Known RBP	4.2	□□□□□ -1.74
SEC9	YGR009C	TFS1	P14306	219 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	TOM40	P23644	387 aa	Known RBP	4.2	□□□□□ -1.74
SEC9	YGR009C	SRP21	P32342	167 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	VMA11	P32842	164 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	RPL14A	P36105	138 aa	Known RBP	4.2	□□□□□ -1.74
SEC9	YGR009C	PDX3	P38075	228 aa	Known RBP	4.2	□□□□□ -1.74
SEC9	YGR009C	YBL081W	P38180	368 aa	Known RBP	4.2	□□□□□ -1.74
SEC9	YGR009C	CCS1	P40202	249 aa	Known RBP	4.2	□□□□□ -1.74
SEC9	YGR009C	CAT5	P41735	233 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	UBP8	P50102	471 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	NCE103	P53615	221 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	SMM1	P53720	384 aa	Known RBP	4.2	□□□□□ -1.74
SEC9	YGR009C	CYT2	Q00873	224 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	MCH4	Q08268	501 aa		4.2	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 49.3 ms