RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 C10orf76Q5T2E6 689 aa12.38□□□□□ -0.43
LINC00538-201ENST00000626109 PAPD7Q5XG87 772 aaKnown RBP12.38□□□□□ -0.43
LINC00538-201ENST00000626109 ANKRD49Q8WVL7 239 aa12.38□□□□□ -0.43
LINC00538-201ENST00000626109 ZNF75CPQ92670 426 aaPredicted RBP12.38□□□□□ -0.43
LINC00538-201ENST00000626109 CCDC43Q96MW1 224 aaKnown RBP12.38□□□□□ -0.43
LINC00538-201ENST00000626109 NACC1Q96RE7 527 aa12.38□□□□□ -0.43
LINC00538-201ENST00000626109 RHOXF2Q9BQY4 288 aa12.38□□□□□ -0.43
LINC00538-201ENST00000626109 C16orf70Q9BSU1 422 aa12.38□□□□□ -0.43
LINC00538-201ENST00000626109 MTG1Q9BT17 334 aaPredicted RBP12.38□□□□□ -0.43
LINC00538-201ENST00000626109 TMEM106CQ9BVX2 250 aa12.38□□□□□ -0.43
LINC00538-201ENST00000626109 NHEJ1Q9H9Q4 299 aaPredicted RBP12.38□□□□□ -0.43
LINC00538-201ENST00000626109 NLRC4Q9NPP4 1024 aa12.38□□□□□ -0.43
LINC00538-201ENST00000626109 FNIP2Q9P278 1114 aa12.38□□□□□ -0.43
LINC00538-201ENST00000626109 WRAP73Q9P2S5 460 aaPredicted RBP12.38□□□□□ -0.43
LINC00538-201ENST00000626109 BLOC1S6Q9UL45 172 aa12.38□□□□□ -0.43
LINC00538-201ENST00000626109 FRMPD3Q5JV73 1810 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 ZNF862O60290 1169 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 CD4P01730 458 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 YWHABP31946 246 aaKnown RBP12.37□□□□□ -0.43
LINC00538-201ENST00000626109 MAGEA8P43361 318 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 NR6A1Q15406 480 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 KCNA10Q16322 511 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 C2orf27AQ580R0 203 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 XKR3Q5GH77 459 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 WDR59Q6PJI9 974 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 UNC13DQ70J99 1090 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 ATP8B4Q8TF62 1192 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 U2AF1L4Q8WU68 220 aaKnown RBP12.37□□□□□ -0.43
LINC00538-201ENST00000626109 ASIC4Q96FT7 647 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 SEC16BQ96JE7 1060 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 CCDC42Q96M95 316 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 TSEN34Q9BSV6 310 aaKnown RBP12.37□□□□□ -0.43
LINC00538-201ENST00000626109 TTYH3Q9C0H2 523 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 ABCB6Q9NP58 842 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 NRBP2Q9NSY0 501 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 SEPT9Q9UHD8 586 aaPredicted RBP12.37□□□□□ -0.43
LINC00538-201ENST00000626109 OGDHLQ9ULD0 1010 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 DNM3Q9UQ16 869 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 PLAAQ9Y263 795 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 REXO2Q9Y3B8 237 aaKnown RBP12.37□□□□□ -0.43
LINC00538-201ENST00000626109 TARSL2A2RTX5 802 aaKnown RBP12.37□□□□□ -0.43
LINC00538-201ENST00000626109 C2orf81A6NN90 581 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 CABYRO75952 493 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 SGPL1O95470 568 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 TFRCP02786 760 aaKnown RBP12.37□□□□□ -0.43
LINC00538-201ENST00000626109 PYGLP06737 847 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 ASGR1P07306 291 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 BTF3P20290 206 aaKnown RBP12.37□□□□□ -0.43
LINC00538-201ENST00000626109 LRRC63Q05C16 580 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 STK4Q13043 487 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 CENPPQ6IPU0 288 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 FOXR2Q6PJQ5 311 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 CXCL17Q6UXB2 119 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 TRMT1LQ7Z2T5 733 aaKnown RBP12.37□□□□□ -0.43
LINC00538-201ENST00000626109 SRLQ86TD4 932 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 RBM18Q96H35 190 aaKnown RBP12.37□□□□□ -0.43
LINC00538-201ENST00000626109 MOGAT1Q96PD6 335 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 PNKPQ96T60 521 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 TSG101Q99816 390 aa12.37□□□□□ -0.43
LINC00538-201ENST00000626109 CWC15Q9P013 229 aaKnown RBP12.37□□□□□ -0.43
LINC00538-201ENST00000626109 TTLL13PA6NNM8 815 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 E9PMD0 336 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 DNM1LO00429 736 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 PMM2O15305 246 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 MPSTP25325 297 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 PSEN2P49810 448 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 SEPHS1P49903 392 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 PDE6CP51160 858 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 ACLYP53396 1101 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 VWA3BQ502W6 1294 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 ZBTB46Q86UZ6 589 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 TRIM58Q8NG06 486 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 PIGOQ8TEQ8 1089 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 LARP4BQ92615 738 aaKnown RBP12.36□□□□□ -0.43
LINC00538-201ENST00000626109 SLC39A3Q9BRY0 314 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 VIPAS39Q9H9C1 493 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 MED4Q9NPJ6 270 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 AGPAT5Q9NUQ2 364 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 IRAK4Q9NWZ3 460 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 TSR3Q9UJK0 312 aaKnown RBP12.36□□□□□ -0.43
LINC00538-201ENST00000626109 ADAM21Q9UKJ8 722 aa12.36□□□□□ -0.43
LINC00538-201ENST00000626109 SERTM1A2A2V5 107 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 ARHGEF35A5YM69 484 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 HBP1O60381 514 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 TACC1O75410 805 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 B3GALNT1O75752 331 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 EYA4O95677 639 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 CAPN2P17655 700 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 ATP4AP20648 1035 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 HNRNPH3P31942 346 aaKnown RBP12.35□□□□□ -0.43
LINC00538-201ENST00000626109 VAV2P52735 878 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 PSMC6P62333 389 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 VSNL1P62760 191 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 MAN2A1Q16706 1144 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 KIAA0753Q2KHM9 967 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 LHFPL2Q6ZUX7 228 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 KCNK18Q7Z418 384 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 GUF1Q8N442 669 aaKnown RBP12.35□□□□□ -0.43
LINC00538-201ENST00000626109 GOLGA6L1Q8N7Z2 621 aa12.35□□□□□ -0.43
LINC00538-201ENST00000626109 CAGE1Q8TC20 777 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms