RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 SLC9A1P19634 815 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 PON1P27169 355 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 KCNMA1Q12791 1236 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 LRMPQ12912 555 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 GPM6BQ13491 265 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 NR1I3Q14994 352 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 UVSSAQ2YD98 709 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 USP41Q3LFD5 358 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 KIAA1841Q6NSI8 718 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 TAS1R1Q7RTX1 841 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 CEP57Q86XR8 500 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 VPS52Q8N1B4 723 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 SPPL3Q8TCT6 385 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 TATDN2Q93075 761 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 PCMTD1Q96MG8 357 aaPredicted RBP12.44□□□□□ -0.42
YBX3-213ENST00000542641 VN1R3Q9BXE9 311 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 OCEL1Q9H607 264 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 ZNF576Q9H609 170 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 APOBEC3GQ9HC16 384 aaKnown RBP12.44□□□□□ -0.42
YBX3-213ENST00000542641 TIMM13Q9Y5L4 95 aaPredicted RBP12.44□□□□□ -0.42
YBX3-213ENST00000542641 H3BNC9 293 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 SOX1O00570 391 aaPredicted RBP12.43□□□□□ -0.42
YBX3-213ENST00000542641 SYN3O14994 580 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 CBFA2T2O43439 604 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 EFEMP2O95967 443 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 SOD2P04179 222 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 TPM3P06753 285 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 TKTP29401 623 aaKnown RBP12.43□□□□□ -0.42
YBX3-213ENST00000542641 UBE3AQ05086 875 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 SYCP1Q15431 976 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 TRIM65Q6PJ69 517 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.43□□□□□ -0.42
YBX3-213ENST00000542641 DPH6Q7L8W6 267 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 METTL23Q86XA0 190 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 TOP6BLQ8N6T0 577 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 APPL2Q8NEU8 664 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 POF1BQ8WVV4 589 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 B3GALT6Q96L58 329 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 NT5C1BQ96P26 610 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 TTPALQ9BTX7 342 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 MFRPQ9BY79 579 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 NIF3L1Q9GZT8 377 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 DSEQ9UL01 958 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 POLIQ9UNA4 740 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 LZTS1Q9Y250 596 aa12.43□□□□□ -0.42
YBX3-213ENST00000542641 GBF1Q92538 1859 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 TMEM265A0A087WTH1 108 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 C2CD2LO14523 706 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 GRM6O15303 877 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 TYMPP19971 482 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 FGFR3P22607 806 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 GLUD2P49448 558 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 KLK7P49862 253 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 CDH8P55286 799 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 APBA1Q02410 837 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 BMS1Q14692 1282 aaKnown RBP12.42□□□□□ -0.42
YBX3-213ENST00000542641 SOWAHAQ2M3V2 549 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 WSCD1Q658N2 575 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 PHLDB3Q6NSJ2 640 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 SARM1Q6SZW1 724 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 SCARA5Q6ZMJ2 495 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 RRAGAQ7L523 313 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 TMC7Q7Z402 723 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 RNF168Q8IYW5 571 aaPredicted RBP12.42□□□□□ -0.42
YBX3-213ENST00000542641 TMEM86AQ8N2M4 240 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 PPM1KQ8N3J5 372 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 PDCL2Q8N4E4 241 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 MICAL1Q8TDZ2 1067 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 LRCH3Q96II8 777 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 FAXDC2Q96IV6 333 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 ERGIC2Q96RQ1 377 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 HERC2P3Q9BVR0 1158 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 LSM14BQ9BX40 385 aaKnown RBP12.42□□□□□ -0.42
YBX3-213ENST00000542641 TRIM5Q9C035 493 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 XPO4Q9C0E2 1151 aaKnown RBP12.42□□□□□ -0.42
YBX3-213ENST00000542641 SMYD3Q9H7B4 428 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 TLR9Q9NR96 1032 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 CHST7Q9NS84 486 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 APEX2Q9UBZ4 518 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 L1RE1Q9UN81 338 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 CHD9Q3L8U1 2897 aa12.42□□□□□ -0.42
YBX3-213ENST00000542641 GOLGA6L3A6NEY3 463 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 EPOPA6NHQ4 379 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 RFXAPO00287 272 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 CSPG5O95196 566 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 CXCL14O95715 111 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 CYP11A1P05108 521 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 URODP06132 367 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 WEE2P0C1S8 567 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 FAM163BP0C2L3 166 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 TBXAS1P24557 533 aaPredicted RBP12.41□□□□□ -0.42
YBX3-213ENST00000542641 DNAJB1P25685 340 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 CA8P35219 290 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 ASPAP45381 313 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 RAP1GAPP47736 663 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 ERVFC1P60507 584 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 YWHAHQ04917 246 aaPredicted RBP12.41□□□□□ -0.42
YBX3-213ENST00000542641 CUL2Q13617 745 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 PTPN21Q16825 1174 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 HABP4Q5JVS0 413 aaKnown RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms