RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 POMCP01189 267 aa8.79□□□□□ -1
NUP54-215ENST00000514313 CD53P19397 219 aa8.79□□□□□ -1
NUP54-215ENST00000514313 RAC3P60763 192 aa8.79□□□□□ -1
NUP54-215ENST00000514313 GRM1Q13255 1194 aa8.79□□□□□ -1
NUP54-215ENST00000514313 PFKFB4Q16877 469 aa8.79□□□□□ -1
NUP54-215ENST00000514313 BMT2Q1RMZ1 405 aa8.79□□□□□ -1
NUP54-215ENST00000514313 VMACQ2NL98 169 aa8.79□□□□□ -1
NUP54-215ENST00000514313 ZACNQ401N2 412 aa8.79□□□□□ -1
NUP54-215ENST00000514313 ZNF385BQ569K4 471 aa8.79□□□□□ -1
NUP54-215ENST00000514313 USP37Q86T82 979 aa8.79□□□□□ -1
NUP54-215ENST00000514313 AOPEPQ8N6M6 819 aa8.79□□□□□ -1
NUP54-215ENST00000514313 ATG16L2Q8NAA4 619 aa8.79□□□□□ -1
NUP54-215ENST00000514313 LRRC46Q96FV0 321 aa8.79□□□□□ -1
NUP54-215ENST00000514313 HEPHQ9BQS7 1158 aa8.79□□□□□ -1
NUP54-215ENST00000514313 LSM14BQ9BX40 385 aaKnown RBP8.79□□□□□ -1
NUP54-215ENST00000514313 CD320Q9NPF0 282 aa8.79□□□□□ -1
NUP54-215ENST00000514313 TBC1D23Q9NUY8 699 aa8.79□□□□□ -1
NUP54-215ENST00000514313 ZNF212Q9UDV6 495 aa8.79□□□□□ -1
NUP54-215ENST00000514313 FAM234BA2RU67 622 aa8.78□□□□□ -1
NUP54-215ENST00000514313 TBKBP1A7MCY6 615 aa8.78□□□□□ -1
NUP54-215ENST00000514313 LGALS16A8MUM7 142 aa8.78□□□□□ -1
NUP54-215ENST00000514313 B4GALT3O60512 393 aa8.78□□□□□ -1
NUP54-215ENST00000514313 AGFG2O95081 481 aa8.78□□□□□ -1
NUP54-215ENST00000514313 ANXA1P04083 346 aa8.78□□□□□ -1
NUP54-215ENST00000514313 TXNP10599 105 aaKnown RBP8.78□□□□□ -1
NUP54-215ENST00000514313 MYL4P12829 197 aa8.78□□□□□ -1
NUP54-215ENST00000514313 SLC6A2P23975 617 aa8.78□□□□□ -1
NUP54-215ENST00000514313 UBXN2BQ14CS0 331 aa8.78□□□□□ -1
NUP54-215ENST00000514313 RNF169Q8NCN4 708 aa8.78□□□□□ -1
NUP54-215ENST00000514313 SCAMP4Q969E2 229 aa8.78□□□□□ -1
NUP54-215ENST00000514313 BORCS6Q96GS4 357 aa8.78□□□□□ -1
NUP54-215ENST00000514313 GDF15Q99988 308 aa8.78□□□□□ -1
NUP54-215ENST00000514313 MAGEH1Q9H213 219 aa8.78□□□□□ -1
NUP54-215ENST00000514313 C12orf65Q9H3J6 166 aaKnown RBP8.78□□□□□ -1
NUP54-215ENST00000514313 C9orf78Q9NZ63 289 aaPredicted RBP8.78□□□□□ -1
NUP54-215ENST00000514313 LRFN1Q9P244 771 aa8.78□□□□□ -1
NUP54-215ENST00000514313 MID2Q9UJV3 735 aa8.78□□□□□ -1
NUP54-215ENST00000514313 E9PLN8 166 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 M0R3H8 397 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 PODXLO00592 558 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 NPC1O15118 1278 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 C1QTNF9P0C862 333 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 PIM1P11309 404 aaPredicted RBP8.77□□□□□ -1.01
NUP54-215ENST00000514313 PTTG1IPP53801 180 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 CSRP2Q16527 193 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 ATXN7L2Q5T6C5 722 aaPredicted RBP8.77□□□□□ -1.01
NUP54-215ENST00000514313 FBXO38Q6PIJ6 1188 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 DOK3Q7L591 496 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 LINC01356Q8N9X3 169 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 CYP2W1Q8TAV3 490 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 TBC1D15Q8TC07 691 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 TFAP2CQ92754 450 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 DDX17Q92841 729 aaKnown RBP8.77□□□□□ -1.01
NUP54-215ENST00000514313 TRIM63Q969Q1 353 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 TBC1D20Q96BZ9 403 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 GCC1Q96CN9 775 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 NEIL1Q96FI4 390 aaPredicted RBP8.77□□□□□ -1.01
NUP54-215ENST00000514313 LTV1Q96GA3 475 aaPredicted RBP8.77□□□□□ -1.01
NUP54-215ENST00000514313 ZNF512Q96ME7 567 aaPredicted RBP8.77□□□□□ -1.01
NUP54-215ENST00000514313 KLHL32Q96NJ5 620 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 VKORC1Q9BQB6 163 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 EIF2AQ9BY44 585 aaKnown RBP8.77□□□□□ -1.01
NUP54-215ENST00000514313 MRPS18AQ9NVS2 196 aaKnown RBP8.77□□□□□ -1.01
NUP54-215ENST00000514313 FAM30AQ9NZY2 134 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 OAZ3Q9UMX2 235 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 TMX2Q9Y320 296 aa8.77□□□□□ -1.01
NUP54-215ENST00000514313 AQP12BA6NM10 295 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 SYT5O00445 386 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 ACKR2O00590 384 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 HNRNPDLO14979 420 aaKnown RBP8.76□□□□□ -1.01
NUP54-215ENST00000514313 AREL1O15033 823 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 RASSF9O75901 435 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 LINC00310P59036 64 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 FAM111BQ6SJ93 734 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 VGLL2Q8N8G2 317 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 SLC17A8Q8NDX2 589 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 FAM46DQ8NEK8 389 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 IPO4Q8TEX9 1081 aaKnown RBP8.76□□□□□ -1.01
NUP54-215ENST00000514313 TRAPPC12Q8WVT3 735 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 SPSB4Q96A44 273 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 FAM84AQ96KN4 292 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 TMEM120AQ9BXJ8 343 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 MS4A7Q9GZW8 240 aaPredicted RBP8.76□□□□□ -1.01
NUP54-215ENST00000514313 AS3MTQ9HBK9 375 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 TM7SF3Q9NS93 570 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 DACT1Q9NYF0 836 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 XPR1Q9UBH6 696 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.76□□□□□ -1.01
NUP54-215ENST00000514313 HDAC9Q9UKV0 1011 aa8.76□□□□□ -1.01
NUP54-215ENST00000514313 A0A087WZ62 844 aa8.75□□□□□ -1.01
NUP54-215ENST00000514313 MYO1CO00159 1063 aa8.75□□□□□ -1.01
NUP54-215ENST00000514313 CDC14BO60729 498 aa8.75□□□□□ -1.01
NUP54-215ENST00000514313 KIF20AO95235 890 aa8.75□□□□□ -1.01
NUP54-215ENST00000514313 ITGB1P05556 798 aa8.75□□□□□ -1.01
NUP54-215ENST00000514313 IL1R2P27930 398 aa8.75□□□□□ -1.01
NUP54-215ENST00000514313 MXRA7P84157 204 aa8.75□□□□□ -1.01
NUP54-215ENST00000514313 ZFYVE27Q5T4F4 411 aa8.75□□□□□ -1.01
NUP54-215ENST00000514313 ZDHHC24Q6UX98 284 aa8.75□□□□□ -1.01
NUP54-215ENST00000514313 GPRIN1Q7Z2K8 1008 aa8.75□□□□□ -1.01
NUP54-215ENST00000514313 SDR16C5Q8N3Y7 309 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms