RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 PRIM2P49643 509 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 SNX16P57768 344 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 UBXN2AP68543 259 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CACNB2Q08289 660 aaPredicted RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 GRIK3Q13003 919 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 TOB2Q14106 344 aaPredicted RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 LRRC32Q14392 662 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 TAF12Q16514 161 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CCNG2Q16589 344 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 SLC5A9Q2M3M2 681 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 ANO4Q32M45 955 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 ZNF792Q3KQV3 632 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 PRAMEF19Q5SWL8 479 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CDCP2Q5VXM1 449 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 TDRD10Q5VZ19 366 aaKnown RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 DARS2Q6PI48 645 aaKnown RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 RIPOR1Q6ZS17 1223 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 TMTC3Q6ZXV5 915 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 RUFY3Q7L099 469 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 SGMS1Q86VZ5 419 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 PPFIBP1Q86W92 1011 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 GRAMD1CQ8IYS0 662 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 ANKRD35Q8N283 1001 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 SRBD1Q8N5C6 995 aaKnown RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 LSM14AQ8ND56 463 aaKnown RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 TRPV1Q8NER1 839 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CHST13Q8NET6 341 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 ANKRD20A12PQ8NF67 263 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 PPP1R35Q8TAP8 253 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 KIAA1524Q8TCG1 905 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 DIS3LQ8TF46 1054 aaKnown RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CHTF18Q8WVB6 975 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CLEC4DQ8WXI8 215 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 TBC1D5Q92609 795 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 FERMT2Q96AC1 680 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 SHISA4Q96DD7 197 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 RSRC1Q96IZ7 334 aaKnown RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 MAML3Q96JK9 1138 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 RMDN3Q96TC7 470 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 GAS2L1Q99501 681 aaPredicted RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CHCHD6Q9BRQ6 235 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 EMILIN2Q9BXX0 1053 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 RNF208Q9H0X6 261 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 BHMT2Q9H2M3 363 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 SUDS3Q9H7L9 328 aaPredicted RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 BRD9Q9H8M2 597 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 GPAMQ9HCL2 828 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 DISC1Q9NRI5 854 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 ETAA1Q9NY74 926 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 KLHL3Q9UH77 587 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 FBXO40Q9UH90 709 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CYP46A1Q9Y6A2 500 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 SMCHD1A6NHR9 2005 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 WDR19Q8NEZ3 1342 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CNTNAP5Q8WYK1 1306 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 BAZ2BQ9UIF8 2168 aaKnown RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 LCTP09848 1927 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 STRNO43815 780 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 PPFIA2O75334 1257 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 H2AFYO75367 372 aaKnown RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 ARIH2O95376 493 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 CRTAMO95727 393 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 CYBAP13498 195 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 PLCG1P19174 1290 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 EN2P19622 333 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 ATP4AP20648 1035 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 XPAP23025 273 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 TNFSF4P23510 183 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 TARSP26639 723 aaKnown RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 POLR2BP30876 1174 aaKnown RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 HOXA13P31271 388 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 KIF5BP33176 963 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 METAP2P50579 478 aaKnown RBP eCLIP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 KPNA1P52294 538 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 ZNF131P52739 623 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 RWDD2BP57060 319 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 RPS6P62753 249 aaKnown RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 CCT2P78371 535 aaKnown RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 KRT83P78385 493 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 PLIN5Q00G26 463 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 OCRLQ01968 901 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 MLLT1Q03111 559 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 HYAL2Q12891 473 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 BAATQ14032 418 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 PDIA5Q14554 519 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 PLCB4Q15147 1175 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 ARSJQ5FYB0 599 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 WIPI1Q5MNZ9 446 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 ATAT1Q5SQI0 421 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 FKBP15Q5T1M5 1219 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 MAP3K21Q5TCX8 1036 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 MFSD14CQ5VZR4 134 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 ZNF385CQ66K41 422 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 HIBCHQ6NVY1 386 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 CAVIN1Q6NZI2 390 aaKnown RBP4.96□□□□□ -1.62
SF3B1-202ENST00000409915 ABHD17CQ6PCB6 329 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 LILRA6Q6PI73 481 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 LRSAM1Q6UWE0 723 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 SYT10Q6XYQ8 523 aa4.96□□□□□ -1.62
SF3B1-202ENST00000409915 SYNE3Q6ZMZ3 975 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms