RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 THAP2Q9H0W7 228 aa10.08□□□□□ -0.8
SF3A3-201ENST00000373019 GBA3Q9H227 469 aa10.08□□□□□ -0.8
SF3A3-201ENST00000373019 S100A14Q9HCY8 104 aa10.08□□□□□ -0.8
SF3A3-201ENST00000373019 ZNF652Q9Y2D9 606 aa10.08□□□□□ -0.8
SF3A3-201ENST00000373019 TSC22D4Q9Y3Q8 395 aa10.08□□□□□ -0.8
SF3A3-201ENST00000373019 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.07□□□□□ -0.8
SF3A3-201ENST00000373019 MYOCOSA0A1B0GUC4 107 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 KLRF2D3W0D1 207 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 H3BRJ5 948 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 CDK16Q00536 496 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 IFIT5Q13325 482 aaKnown RBP10.07□□□□□ -0.8
SF3A3-201ENST00000373019 ACAP1Q15027 740 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 FYB2Q5VWT5 728 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 IQCF2Q8IXL9 164 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 MARVELD2Q8N4S9 558 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 DDX12PQ92771 950 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 VPS50Q96JG6 964 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 CGREF1Q99674 301 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 LRRC27Q9C0I9 530 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 TRABDQ9H4I3 376 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 PSTPIP2Q9H939 334 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 LIN28AQ9H9Z2 209 aaKnown RBP10.07□□□□□ -0.8
SF3A3-201ENST00000373019 TAS2R14Q9NYV8 317 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 FRMPD4Q14CM0 1322 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 CAPN14A8MX76 684 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 DLDP09622 509 aaKnown RBP10.07□□□□□ -0.8
SF3A3-201ENST00000373019 ATP6V1B1P15313 513 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 CALML3P27482 149 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 ITGA8P53708 1063 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 SNAPC2Q13487 334 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 UBE4AQ14139 1066 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 EFTUD2Q15029 972 aaKnown RBP eCLIP10.07□□□□□ -0.81e-7■■■■■ 44.2
SF3A3-201ENST00000373019 DEPDC1Q5TB30 811 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 VGLL2Q8N8G2 317 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 USP6NLQ92738 828 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 SYT11Q9BT88 431 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 ZBTB3Q9H5J0 574 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 SRP68Q9UHB9 627 aaKnown RBP10.07□□□□□ -0.8
SF3A3-201ENST00000373019 RREB1Q92766 1687 aa10.07□□□□□ -0.8
SF3A3-201ENST00000373019 CCDC194A0A1B0GVG4 234 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 CALM1P0DP23 149 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 CALM2P0DP24 149 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 CALM3P0DP25 149 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 ITIH2P19823 946 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 KRT17Q04695 432 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 CD300CQ08708 224 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 GK3PQ14409 553 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 DLGAP5Q15398 846 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 ZNF423Q2M1K9 1284 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 HSP90AA5PQ58FG0 334 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 C16orf87Q6PH81 154 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 LVRNQ6Q4G3 990 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 KCNK18Q7Z418 384 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 PPM1KQ8N3J5 372 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 C12orf50Q8NA57 414 aaPredicted RBP10.06□□□□□ -0.8
SF3A3-201ENST00000373019 CCDC110Q8TBZ0 833 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 LARP4BQ92615 738 aaKnown RBP10.06□□□□□ -0.8
SF3A3-201ENST00000373019 C9orf72Q96LT7 481 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 MKNK1Q9BUB5 465 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 CRNKL1Q9BZJ0 848 aaKnown RBP10.06□□□□□ -0.8
SF3A3-201ENST00000373019 NMUR2Q9GZQ4 415 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 DNAJC18Q9H819 358 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 LRRC4BQ9NT99 713 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 NOX1Q9Y5S8 564 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 AK5Q9Y6K8 562 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 A0A1W2PPM1 405 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 MINDY4BA8MYZ0 360 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 CYP26A1O43174 497 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 NMT2O60551 498 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 DDAH1O94760 285 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 FUCA1P04066 466 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 OR52Z1P0C646 297 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 CA4P22748 312 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 RPL26P61254 145 aaKnown RBP10.06□□□□□ -0.8
SF3A3-201ENST00000373019 XIAPP98170 497 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 BTKQ06187 659 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 APOFQ13790 326 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 STAT4Q14765 748 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 ARSHQ5FYA8 562 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 MAP3K21Q5TCX8 1036 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 C1orf146Q5VVC0 180 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 ERI1Q8IV48 349 aaKnown RBP10.06□□□□□ -0.8
SF3A3-201ENST00000373019 ZC3H3Q8IXZ2 948 aaKnown RBP10.06□□□□□ -0.8
SF3A3-201ENST00000373019 GSTCDQ8NEC7 633 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 GDPD5Q8WTR4 605 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 SLCO2A1Q92959 643 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 COX4I2Q96KJ9 171 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 ZSWIM1Q9BR11 485 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 THTPAQ9BU02 230 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 TMEM120AQ9BXJ8 343 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 MRPL1Q9BYD6 325 aaKnown RBP10.06□□□□□ -0.8
SF3A3-201ENST00000373019 NACAP1Q9BZK3 213 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 KCTD10Q9H3F6 313 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 ARMC7Q9H6L4 198 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 LRRC19Q9H756 370 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 FAF1Q9UNN5 650 aaPredicted RBP10.06□□□□□ -0.8
SF3A3-201ENST00000373019 COQ6Q9Y2Z9 468 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 DUOX1Q9NRD9 1551 aa10.06□□□□□ -0.8
SF3A3-201ENST00000373019 DENRO43583 198 aaKnown RBP10.06□□□□□ -0.8
SF3A3-201ENST00000373019 FKBP6O75344 327 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms