RNA–Protein interactions for RNA: YDR499W

LCD1, Transcript of Essential protein required for the DNA integrity checkpoint pathways, yeast

Gene LCD1, Length 2,244 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCD1	YDR499W	POP3	P53833	195 aa	Predicted RBP	0.64	□□□□□ -2.31
LCD1	YDR499W	LSM7	P53905	115 aa	Known RBP	0.64	□□□□□ -2.31
LCD1	YDR499W	YDR274C	P87283	123 aa		0.64	□□□□□ -2.31
LCD1	YDR499W	GIS3	Q12418	502 aa		0.64	□□□□□ -2.31
LCD1	YDR499W	RPL25	P04456	142 aa	Known RBP	0.64	□□□□□ -2.31
LCD1	YDR499W	RPB3	P16370	318 aa	Known RBP	0.64	□□□□□ -2.31
LCD1	YDR499W	MAG1	P22134	296 aa	Known RBP	0.64	□□□□□ -2.31
LCD1	YDR499W	SAY1	P53324	424 aa		0.64	□□□□□ -2.31
LCD1	YDR499W	COG5	P53951	403 aa		0.64	□□□□□ -2.31
LCD1	YDR499W	YNG1	Q08465	219 aa		0.64	□□□□□ -2.31
LCD1	YDR499W	CPA1	P07258	411 aa	Known RBP	0.63	□□□□□ -2.31
LCD1	YDR499W	GPA2	P10823	449 aa		0.63	□□□□□ -2.31
LCD1	YDR499W	RPB4	P20433	221 aa	Predicted RBP	0.63	□□□□□ -2.31
LCD1	YDR499W	ATP15	P21306	62 aa		0.63	□□□□□ -2.31
LCD1	YDR499W	RFA3	P26755	122 aa	Known RBP	0.63	□□□□□ -2.31
LCD1	YDR499W	TFC1	P32367	649 aa		0.63	□□□□□ -2.31
LCD1	YDR499W	SPS18	P32572	300 aa		0.63	□□□□□ -2.31
LCD1	YDR499W	YBR209W	P38311	105 aa		0.63	□□□□□ -2.31
LCD1	YDR499W	TRM5	P38793	499 aa		0.63	□□□□□ -2.31
LCD1	YDR499W	BNA7	Q04066	261 aa		0.63	□□□□□ -2.31
LCD1	YDR499W	YOL160W	Q08321	113 aa		0.63	□□□□□ -2.31
LCD1	YDR499W	RIO1	Q12196	484 aa	Known RBP	0.63	□□□□□ -2.31
LCD1	YDR499W	YLR236C	A0A023PZG4	107 aa		0.62	□□□□□ -2.31
LCD1	YDR499W	SIR2	P06700	562 aa		0.62	□□□□□ -2.31
LCD1	YDR499W	QCR8	P08525	94 aa		0.62	□□□□□ -2.31
LCD1	YDR499W	NTG1	P31378	399 aa		0.62	□□□□□ -2.31
LCD1	YDR499W	HMF1	P40037	129 aa	Known RBP	0.62	□□□□□ -2.31
LCD1	YDR499W	ERJ5	P43613	295 aa	Predicted RBP	0.62	□□□□□ -2.31
LCD1	YDR499W	KNH1	P50112	268 aa		0.62	□□□□□ -2.31
LCD1	YDR499W	MPA43	P53583	542 aa	Predicted RBP	0.62	□□□□□ -2.31
LCD1	YDR499W	CUS2	P53830	285 aa	Predicted RBP	0.62	□□□□□ -2.31
LCD1	YDR499W	ATG40	Q99325	256 aa		0.62	□□□□□ -2.31
LCD1	YDR499W	AIM25	P47140	327 aa		0.62	□□□□□ -2.31
LCD1	YDR499W	GGA1	Q06336	557 aa		0.62	□□□□□ -2.31
LCD1	YDR499W	MDM32	Q12171	622 aa		0.62	□□□□□ -2.31
LCD1	YDR499W	IKI3	Q06706	1349 aa	Known RBP	0.62	□□□□□ -2.31
LCD1	YDR499W	FAS1	P07149	2051 aa	Known RBP	0.62	□□□□□ -2.31
LCD1	YDR499W	ACC1	Q00955	2233 aa	Known RBP	0.61	□□□□□ -2.31
LCD1	YDR499W	HTB1	P02293	131 aa	Known RBP	0.61	□□□□□ -2.31
LCD1	YDR499W	HTB2	P02294	131 aa		0.61	□□□□□ -2.31
LCD1	YDR499W	RPL27A	P0C2H6	136 aa	Known RBP	0.61	□□□□□ -2.31
LCD1	YDR499W	KDX1	P36005	433 aa		0.61	□□□□□ -2.31
LCD1	YDR499W	YKT6	P36015	200 aa	Known RBP	0.61	□□□□□ -2.31
LCD1	YDR499W	YDL180W	Q12301	547 aa		0.61	□□□□□ -2.31
LCD1	YDR499W	ODC2	Q99297	307 aa		0.61	□□□□□ -2.31
LCD1	YDR499W	CDC36	P06100	191 aa	Predicted RBP	0.61	□□□□□ -2.31
LCD1	YDR499W	SEC11	P15367	167 aa		0.61	□□□□□ -2.31
LCD1	YDR499W	CKS1	P20486	150 aa	Known RBP	0.61	□□□□□ -2.31
LCD1	YDR499W	OCH1	P31755	480 aa		0.61	□□□□□ -2.31
LCD1	YDR499W	TVP38	P36164	337 aa		0.61	□□□□□ -2.31
LCD1	YDR499W	VMA22	P38784	181 aa		0.61	□□□□□ -2.31
LCD1	YDR499W	ERG10	P41338	398 aa	Known RBP	0.61	□□□□□ -2.31
LCD1	YDR499W	MPC3	P53311	146 aa		0.61	□□□□□ -2.31
LCD1	YDR499W	UBC7	Q02159	165 aa		0.61	□□□□□ -2.31
LCD1	YDR499W	CUE4	Q04201	117 aa	Predicted RBP	0.61	□□□□□ -2.31
LCD1	YDR499W	HNT1	Q04344	158 aa	Known RBP	0.61	□□□□□ -2.31
LCD1	YDR499W	RAD28	Q12021	506 aa		0.61	□□□□□ -2.31
LCD1	YDR499W	YCL012C	Q8J0M4	134 aa		0.61	□□□□□ -2.31
LCD1	YDR499W	CNB1	P25296	175 aa		0.6	□□□□□ -2.31
LCD1	YDR499W	ASF2	P32448	525 aa	Predicted RBP	0.6	□□□□□ -2.31
LCD1	YDR499W	OPY1	P38271	328 aa		0.6	□□□□□ -2.31
LCD1	YDR499W	YER076C	P40049	302 aa		0.6	□□□□□ -2.31
LCD1	YDR499W	YMR226C	Q05016	267 aa	Known RBP	0.6	□□□□□ -2.31
LCD1	YDR499W	YRA1	Q12159	226 aa	Known RBP	0.6	□□□□□ -2.31
LCD1	YDR499W	MSB2	P32334	1306 aa		0.6	□□□□□ -2.31
LCD1	YDR499W	MRS1	P07266	363 aa		0.6	□□□□□ -2.31
LCD1	YDR499W	CBF1	P17106	351 aa		0.6	□□□□□ -2.31
LCD1	YDR499W	YER034W	P40022	185 aa	Known RBP	0.6	□□□□□ -2.31
LCD1	YDR499W	RFC4	P40339	323 aa	Known RBP	0.6	□□□□□ -2.31
LCD1	YDR499W	SKI6	P46948	246 aa	Predicted RBP	0.6	□□□□□ -2.31
LCD1	YDR499W	JIP3	O13555	125 aa		0.59	□□□□□ -2.31
LCD1	YDR499W	POR1	P04840	283 aa	Known RBP	0.59	□□□□□ -2.31
LCD1	YDR499W	MATALPHA2	P0CY08	210 aa		0.59	□□□□□ -2.31
LCD1	YDR499W	HMLALPHA2	P0CY09	210 aa		0.59	□□□□□ -2.31
LCD1	YDR499W	SPO13	P23624	291 aa		0.59	□□□□□ -2.31
LCD1	YDR499W	RIO2	P40160	425 aa	Known RBP	0.59	□□□□□ -2.31
LCD1	YDR499W	ARP3	P47117	449 aa	Known RBP	0.59	□□□□□ -2.31
LCD1	YDR499W	MMS2	P53152	137 aa		0.59	□□□□□ -2.31
LCD1	YDR499W	ABP140	Q08641	628 aa	Known RBP	0.59	□□□□□ -2.31
LCD1	YDR499W	DGA1	Q08650	418 aa		0.59	□□□□□ -2.31
LCD1	YDR499W	YNL146C-A	Q3E7Z1	64 aa		0.59	□□□□□ -2.31
LCD1	YDR499W	MBF1	O14467	151 aa	Known RBP	0.58	□□□□□ -2.32
LCD1	YDR499W	VAR1	P02381	398 aa		0.58	□□□□□ -2.32
LCD1	YDR499W	YCR090C	P25654	182 aa	Known RBP	0.58	□□□□□ -2.32
LCD1	YDR499W	PAN3	P36102	679 aa	Predicted RBP	0.58	□□□□□ -2.32
LCD1	YDR499W	TVP23	P38962	199 aa		0.58	□□□□□ -2.32
LCD1	YDR499W	YPL073C	P40323	161 aa		0.58	□□□□□ -2.32
LCD1	YDR499W	FLX1	P40464	311 aa		0.58	□□□□□ -2.32
LCD1	YDR499W	YAE1	P47118	141 aa	Predicted RBP	0.58	□□□□□ -2.32
LCD1	YDR499W	GET1	P53192	235 aa		0.58	□□□□□ -2.32
LCD1	YDR499W	NOP19	P53317	196 aa	Predicted RBP	0.58	□□□□□ -2.32
LCD1	YDR499W	MRPS17	Q03246	237 aa	Predicted RBP	0.58	□□□□□ -2.32
LCD1	YDR499W	FUS2	Q05670	677 aa		0.58	□□□□□ -2.32
LCD1	YDR499W	YPR174C	Q06616	221 aa	Predicted RBP	0.58	□□□□□ -2.32
LCD1	YDR499W	GET4	Q12125	312 aa		0.58	□□□□□ -2.32
LCD1	YDR499W	YEA4	P40004	342 aa		0.58	□□□□□ -2.32
LCD1	YDR499W	YER134C	P40081	178 aa		0.58	□□□□□ -2.32
LCD1	YDR499W	SER2	P42941	309 aa		0.58	□□□□□ -2.32
LCD1	YDR499W	ARO8	P53090	500 aa	Known RBP	0.58	□□□□□ -2.32
LCD1	YDR499W	CWC21	Q03375	135 aa	Known RBP	0.58	□□□□□ -2.32

Retrieved 100 of 5,963 RNA–protein pairs in 20.5 ms