RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 HAUS2Q9NVX0 235 aa11□□□□□ -0.65
LIG1-220ENST00000601091 PKD1L3Q7Z443 1732 aa11□□□□□ -0.65
LIG1-220ENST00000601091 MYH10P35580 1976 aa11□□□□□ -0.65
LIG1-220ENST00000601091 K7ERI5 159 aa11□□□□□ -0.65
LIG1-220ENST00000601091 PSAPP07602 524 aa11□□□□□ -0.65
LIG1-220ENST00000601091 FGFR4P22455 802 aa11□□□□□ -0.65
LIG1-220ENST00000601091 CCND2P30279 289 aa11□□□□□ -0.65
LIG1-220ENST00000601091 HOXD12P35452 270 aa11□□□□□ -0.65
LIG1-220ENST00000601091 SLC29A2Q14542 456 aa11□□□□□ -0.65
LIG1-220ENST00000601091 CNGA3Q16281 694 aa11□□□□□ -0.65
LIG1-220ENST00000601091 EMC10Q5UCC4 262 aa11□□□□□ -0.65
LIG1-220ENST00000601091 IRF2BP2Q7Z5L9 587 aa11□□□□□ -0.65
LIG1-220ENST00000601091 NT5DC3Q86UY8 548 aa11□□□□□ -0.65
LIG1-220ENST00000601091 NT5DC4Q86YG4 428 aa11□□□□□ -0.65
LIG1-220ENST00000601091 MREGQ8N565 214 aa11□□□□□ -0.65
LIG1-220ENST00000601091 SMC6Q96SB8 1091 aa11□□□□□ -0.65
LIG1-220ENST00000601091 FAM213AQ9BRX8 229 aa11□□□□□ -0.65
LIG1-220ENST00000601091 BTNL10A8MVZ5 291 aa11□□□□□ -0.65
LIG1-220ENST00000601091 NOL4O94818 638 aa11□□□□□ -0.65
LIG1-220ENST00000601091 SLITRK3O94933 977 aa11□□□□□ -0.65
LIG1-220ENST00000601091 KRT19P08727 400 aa11□□□□□ -0.65
LIG1-220ENST00000601091 CHN1P15882 459 aa11□□□□□ -0.65
LIG1-220ENST00000601091 YWHAEP62258 255 aaKnown RBP11□□□□□ -0.65
LIG1-220ENST00000601091 MTERF2Q49AM1 385 aa11□□□□□ -0.65
LIG1-220ENST00000601091 ZCWPW2Q504Y3 356 aa11□□□□□ -0.65
LIG1-220ENST00000601091 DCAF15Q66K64 600 aa11□□□□□ -0.65
LIG1-220ENST00000601091 TMEM53Q6P2H8 277 aa11□□□□□ -0.65
LIG1-220ENST00000601091 SHQ1Q6PI26 577 aaKnown RBP11□□□□□ -0.65
LIG1-220ENST00000601091 ZFPM1Q8IX07 1006 aa11□□□□□ -0.65
LIG1-220ENST00000601091 IQCKQ8N0W5 287 aa11□□□□□ -0.65
LIG1-220ENST00000601091 LILRB2Q8N423 598 aa11□□□□□ -0.65
LIG1-220ENST00000601091 GDAP1Q8TB36 358 aa11□□□□□ -0.65
LIG1-220ENST00000601091 CASZ1Q86V15 1759 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 NUP188Q5SRE5 1749 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 SIPA1L3O60292 1781 aaPredicted RBP10.99□□□□□ -0.65
LIG1-220ENST00000601091 RASSF10A6NK89 507 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 EML1O00423 815 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 SNX2O60749 519 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 MYO1EQ12965 1108 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 SNRNP35Q16560 246 aaKnown RBP10.99□□□□□ -0.65
LIG1-220ENST00000601091 ARSHQ5FYA8 562 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 CFAP157Q5JU67 520 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 TMTC4Q5T4D3 741 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 OTOP1Q7RTM1 612 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 TBC1D1Q86TI0 1168 aaPredicted RBP10.99□□□□□ -0.65
LIG1-220ENST00000601091 TRIML2Q8N7C3 387 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 LRRC8CQ8TDW0 803 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 RAB3IPQ96QF0 476 aaPredicted RBP10.99□□□□□ -0.65
LIG1-220ENST00000601091 NRBP2Q9NSY0 501 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.99□□□□□ -0.65
LIG1-220ENST00000601091 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.99□□□□□ -0.65
LIG1-220ENST00000601091 C2CD2Q9Y426 696 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 EXOC1LA0A1B0GW35 172 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 NOP56O00567 594 aaKnown RBP10.99□□□□□ -0.65
LIG1-220ENST00000601091 PPP1R11O60927 126 aaPredicted RBP10.99□□□□□ -0.65
LIG1-220ENST00000601091 ECE1P42892 770 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 TMED2Q15363 201 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 CD302Q8IX05 232 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 SLC30A5Q8TAD4 765 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 MDM1Q8TC05 714 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 SENP7Q9BQF6 1050 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 FAM167BQ9BTA0 163 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 FGFBP2Q9BYJ0 223 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 KCNH7Q9NS40 1196 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 ATF5Q9Y2D1 282 aaPredicted RBP10.99□□□□□ -0.65
LIG1-220ENST00000601091 H0YC42 278 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 ARP10275 920 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 BRAFP15056 766 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 KCNJ1P48048 391 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 CRY2Q49AN0 593 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 MIS18BP1Q6P0N0 1132 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 CERS5Q8N5B7 392 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 ZBTB8BQ8NAP8 495 aaPredicted RBP10.99□□□□□ -0.65
LIG1-220ENST00000601091 GALNT6Q8NCL4 622 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 ACER1Q8TDN7 264 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 KCNN1Q92952 543 aa10.99□□□□□ -0.65
LIG1-220ENST00000601091 LRP6O75581 1613 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 SGK1O00141 431 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 XPOTO43592 962 aaKnown RBP10.98□□□□□ -0.65
LIG1-220ENST00000601091 CIITAP33076 1130 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 PTENP60484 403 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 KRT17Q04695 432 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 COG2Q14746 738 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 CCDC38Q502W7 563 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 CDCA2Q69YH5 1023 aaPredicted RBP10.98□□□□□ -0.65
LIG1-220ENST00000601091 SLFN12LQ6IEE8 588 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 SLC30A10Q6XR72 485 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 TRMT10CQ7L0Y3 403 aaKnown RBP10.98□□□□□ -0.65
LIG1-220ENST00000601091 ZBTB8OSQ8IWT0 167 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 RTKN2Q8IZC4 609 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 FBXO25Q8TCJ0 367 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 FAM151AQ8WW52 585 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 SNF8Q96H20 258 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 LBHD1Q9BQE6 289 aaPredicted RBP10.98□□□□□ -0.65
LIG1-220ENST00000601091 ZSWIM1Q9BR11 485 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 C11orf70Q9BRQ4 267 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 UQCC2Q9BRT2 126 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 CHORDC1Q9UHD1 332 aaPredicted RBP10.98□□□□□ -0.65
LIG1-220ENST00000601091 OPLAHO14841 1288 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 CLDN3O15551 220 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms