RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CXCL8P10145 99 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 GNAT1P11488 350 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 ARF4P18085 180 aaPredicted RBP17.99■□□□□ 0.47
LDLR-206ENST00000557958 NSFP46459 744 aaKnown RBP17.99■□□□□ 0.47
LDLR-206ENST00000557958 TNNC1P63316 161 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 KIZQ2M2Z5 673 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 DCAF4L1Q3SXM0 396 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 KLHDC9Q8NEP7 349 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 UNC93B1Q9H1C4 597 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 HTTP42858 3142 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 CEP104O60308 925 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 TSPAN1O60635 241 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 ZRANB2O95218 330 aaKnown RBP eCLIP17.99■□□□□ 0.47
LDLR-206ENST00000557958 MYL6P60660 151 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 C8orf74Q6P047 294 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 NT5DC4Q86YG4 428 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 CD302Q8IX05 232 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 UBL4BQ8N7F7 174 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 ELMO3Q96BJ8 720 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 NAP1L3Q99457 506 aaPredicted RBP17.99■□□□□ 0.47
LDLR-206ENST00000557958 GOLPH3Q9H4A6 298 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 RNF216Q9NWF9 866 aaPredicted RBP17.99■□□□□ 0.47
LDLR-206ENST00000557958 ZNF446Q9NWS9 450 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 EVPLQ92817 2033 aa17.98■□□□□ 0.47
LDLR-206ENST00000557958 MBLAC1A4D2B0 266 aaPredicted RBP17.98■□□□□ 0.47
LDLR-206ENST00000557958 VSNL1P62760 191 aa17.98■□□□□ 0.47
LDLR-206ENST00000557958 LHX8Q68G74 356 aa17.98■□□□□ 0.47
LDLR-206ENST00000557958 CDR2LQ86X02 465 aaPredicted RBP17.98■□□□□ 0.47
LDLR-206ENST00000557958 EFCAB13Q8IY85 973 aa17.98■□□□□ 0.47
LDLR-206ENST00000557958 CEP120Q8N960 986 aa17.98■□□□□ 0.47
LDLR-206ENST00000557958 USP38Q8NB14 1042 aa17.98■□□□□ 0.47
LDLR-206ENST00000557958 ZNF564Q8TBZ8 553 aaPredicted RBP17.98■□□□□ 0.47
LDLR-206ENST00000557958 MS4A14Q96JA4 679 aa17.98■□□□□ 0.47
LDLR-206ENST00000557958 RPS6KC1Q96S38 1066 aa17.98■□□□□ 0.47
LDLR-206ENST00000557958 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.98■□□□□ 0.472e-12■■□□□ 11.5
LDLR-206ENST00000557958 NUP85Q9BW27 656 aa17.98■□□□□ 0.47
LDLR-206ENST00000557958 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.98■□□□□ 0.47
LDLR-206ENST00000557958 FAM53CQ9NYF3 392 aa17.98■□□□□ 0.47
LDLR-206ENST00000557958 A0A1B0GUA9 196 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 CST3P01034 146 aaPredicted RBP17.97■□□□□ 0.47
LDLR-206ENST00000557958 UNGP13051 313 aaPredicted RBP17.97■□□□□ 0.47
LDLR-206ENST00000557958 CENPCQ03188 943 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 MTFR1Q15390 333 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 LONRF2Q1L5Z9 754 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 LIN9Q5TKA1 542 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 CPB2Q96IY4 423 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 ACAP3Q96P50 834 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 CARD9Q9H257 536 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 AVENQ9NQS1 362 aaPredicted RBP17.97■□□□□ 0.47
LDLR-206ENST00000557958 COG5Q9UP83 839 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 THAP12O43422 761 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 CYP1A1P04798 512 aaPredicted RBP17.97■□□□□ 0.47
LDLR-206ENST00000557958 P4HA1P13674 534 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 FGFR4P22455 802 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 ATICP31939 592 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 ACLYP53396 1101 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 CCSAPQ6IQ19 270 aaPredicted RBP17.97■□□□□ 0.47
LDLR-206ENST00000557958 GDF6Q6KF10 455 aaPredicted RBP17.97■□□□□ 0.47
LDLR-206ENST00000557958 VCPIP1Q96JH7 1222 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 RNF208Q9H0X6 261 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 RBM12Q9NTZ6 932 aaKnown RBP17.97■□□□□ 0.47
LDLR-206ENST00000557958 CNOT8Q9UFF9 292 aaKnown RBP17.97■□□□□ 0.47
LDLR-206ENST00000557958 GTF2IRD1Q9UHL9 959 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 C2CD2Q9Y426 696 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 KAT6AQ92794 2004 aa17.97■□□□□ 0.47
LDLR-206ENST00000557958 UMODL1Q5DID0 1318 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 LACTBL1A8MY62 500 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 CCDC188H7C350 402 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 KRT19P08727 400 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 CST5P28325 142 aaPredicted RBP17.96■□□□□ 0.47
LDLR-206ENST00000557958 ZNF132P52740 706 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 NKX3-2P78367 333 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 TMEM132DQ14C87 1099 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 ZNF667Q5HYK9 610 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 CATSPER4Q7RTX7 472 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 MCOLN2Q8IZK6 566 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 RASGEF1CQ8N431 466 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 UBR7Q8N806 425 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 OSMRQ99650 979 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 WNT8AQ9H1J5 351 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 ADAMTS10Q9H324 1103 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 CDHR5Q9HBB8 845 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 CISHQ9NSE2 258 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 EHD2Q9NZN4 543 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 TTC7AQ9ULT0 858 aaPredicted RBP17.96■□□□□ 0.47
LDLR-206ENST00000557958 ALG6Q9Y672 507 aa17.96■□□□□ 0.47
LDLR-206ENST00000557958 SEC31AO94979 1220 aaKnown RBP17.95■□□□□ 0.46
LDLR-206ENST00000557958 LSM8O95777 96 aaKnown RBP17.95■□□□□ 0.46
LDLR-206ENST00000557958 AXLP30530 894 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 GRM5P41594 1212 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 ADAM17P78536 824 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 ITGA7Q13683 1181 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 NAA35Q5VZE5 725 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 JADE1Q6IE81 842 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 HDXQ7Z353 690 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 KRT222Q8N1A0 295 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 DEFB118Q96PH6 123 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 XYLT2Q9H1B5 865 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 SMARCAL1Q9NZC9 954 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 STIM2Q9P246 746 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms