RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CDT1Q9H211 546 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 AGO3Q9H9G7 860 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 Q9Y3F1 56 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 MEIS3P2A8K0S8 358 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 H0Y3Z8 333 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 SGPL1O95470 568 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 CALCAP01258 141 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 STAG3L1P0CL83 205 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 YARSP54577 528 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 CBWD6Q4V339 395 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 CBWD3Q5JTY5 395 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 CBWD5Q5RIA9 395 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 TAF2Q6P1X5 1199 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 TMCO2Q7Z6W1 182 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 KIF2BQ8N4N8 673 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 KIF12Q96FN5 646 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 ZFP42Q96MM3 310 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 ACO2Q99798 780 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 ADAM2Q99965 735 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 HAPLN2Q9GZV7 340 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 AGPAT5Q9NUQ2 364 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 USH1CQ9Y6N9 552 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 WDR81Q562E7 1941 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 SMIM35A0A1B0GVV1 85 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 TMCO5BA8MYB1 307 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 DARSP14868 501 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 WNT7BP56706 349 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 ORC1Q13415 861 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 EDRF1Q3B7T1 1238 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 ZCWPW2Q504Y3 356 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 NAA35Q5VZE5 725 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 CYB5D1Q6P9G0 228 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 MPZL3Q6UWV2 235 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 CCT8L2Q96SF2 557 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 UBXN6Q9BZV1 441 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 RNF39Q9H2S5 420 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 GOLGA2P5Q9HBQ8 144 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 TRAF3IP3Q9Y228 551 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 TRPV2Q9Y5S1 764 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 LAMA3Q16787 3333 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 LGALS16A8MUM7 142 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 ARVCFO00192 962 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 AKR1B10O60218 316 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 TSPAN1O60635 241 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 POMCP01189 267 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 ACRP10323 421 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 VAV2P52735 878 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 PPP3CAQ08209 521 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 AMHR2Q16671 573 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 WHAMMP3Q1A5X7 153 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 SLFN12LQ6IEE8 588 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 ADAT2Q7Z6V5 191 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 KLHDC9Q8NEP7 349 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 DPF3Q92784 378 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 CEP63Q96MT8 703 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 RPS6KC1Q96S38 1066 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 CFHR5Q9BXR6 569 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 HIPK3Q9H422 1215 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 MLXIPLQ9NP71 852 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 PADI3Q9ULW8 664 aa9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 LUC7L2Q9Y383 392 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-209ENST00000509277 MOXD2PA6NHM9 499 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 EPHB6O15197 1021 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 CHRNA1P02708 482 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 NR1D1P20393 614 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 LSP1P33241 339 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 SPA17Q15506 151 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 SPOUT1Q5T280 376 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 NOTUMQ6P988 496 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 DNAAF5Q86Y56 855 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 SLC17A8Q8NDX2 589 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 OR5B17Q8NGF7 314 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 ZNF473Q8WTR7 871 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 ACAP3Q96P50 834 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 IFIH1Q9BYX4 1025 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 CXCL16Q9H2A7 254 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 METTL14Q9HCE5 456 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 EPB41L5Q9HCM4 733 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 UBE2TQ9NPD8 197 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 ZMYND8Q9ULU4 1186 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 IGKV6-21A0A0C4DH24 114 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 HAS3O00219 553 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 OGTO15294 1046 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 TLR3O15455 904 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 PPP1R37O75864 691 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 GNA14O95837 355 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 RAG1P15918 1043 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 RNASELQ05823 741 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 SCARA3Q6AZY7 606 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 INTS8Q75QN2 995 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 FAM228AQ86W67 206 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 RPUSD2Q8IZ73 545 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 TAS1R2Q8TE23 839 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 MS4A14Q96JA4 679 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 PRKAG2Q9UGJ0 569 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 LIMA1Q9UHB6 759 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 EPN1Q9Y6I3 576 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 TTC26A0AVF1 554 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 PYGLP06737 847 aa9.25□□□□□ -0.93
LIMCH1-209ENST00000509277 KIF5AQ12840 1032 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms