RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 BEST2Q8NFU1 509 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 CTNNBL1Q8WYA6 563 aaPredicted RBP19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 PNKPQ96T60 521 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 VRTNQ9H8Y1 702 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 STARD7Q9NQZ5 370 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 SNTG2Q9NY99 539 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 NENFQ9UMX5 172 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 L1RE1Q9UN81 338 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 NOC2LQ9Y3T9 749 aaKnown RBP19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 NUB1Q9Y5A7 615 aa19.47■□□□□ 0.71
CCDC88C-203ENST00000389856 A0A0A6YYK5 440 aaPredicted RBP19.46■□□□□ 0.71
CCDC88C-203ENST00000389856 ATF7P17544 494 aaPredicted RBP19.46■□□□□ 0.71
CCDC88C-203ENST00000389856 TERF2Q15554 542 aa19.46■□□□□ 0.71
CCDC88C-203ENST00000389856 SPOPLQ6IQ16 392 aa19.46■□□□□ 0.71
CCDC88C-203ENST00000389856 TRIM72Q6ZMU5 477 aa19.46■□□□□ 0.71
CCDC88C-203ENST00000389856 MMS19Q96T76 1030 aa19.46■□□□□ 0.71
CCDC88C-203ENST00000389856 EIF2AQ9BY44 585 aaKnown RBP19.46■□□□□ 0.71
CCDC88C-203ENST00000389856 APOBEC3GQ9HC16 384 aaKnown RBP19.46■□□□□ 0.71
CCDC88C-203ENST00000389856 DPP3Q9NY33 737 aa19.46■□□□□ 0.71
CCDC88C-203ENST00000389856 NOCTQ9UK39 431 aaKnown RBP19.46■□□□□ 0.71
CCDC88C-203ENST00000389856 PHF24Q9UPV7 400 aa19.46■□□□□ 0.71
CCDC88C-203ENST00000389856 CNTN6Q9UQ52 1028 aa19.46■□□□□ 0.71
CCDC88C-203ENST00000389856 DUSP10Q9Y6W6 482 aa19.46■□□□□ 0.71
CCDC88C-203ENST00000389856 CST3P01034 146 aaPredicted RBP19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 CD4P01730 458 aa19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 ITGB3P05106 788 aa19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 RHOXF2BP0C7M4 288 aa19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 TMEM253P0C7T8 217 aa19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 MGAT3Q09327 533 aa19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 FAM43BQ6ZT52 329 aaPredicted RBP19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 C1orf127Q8N9H9 656 aa19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 NOA1Q8NC60 698 aaKnown RBP19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 LNX1Q8TBB1 728 aaPredicted RBP19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 RHOXF2Q9BQY4 288 aa19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 DNAI2Q9GZS0 605 aa19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 CYP3A43Q9HB55 503 aa19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 CNTN3Q9P232 1028 aa19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 UBQLN1Q9UMX0 589 aaKnown RBP19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 PTPN22Q9Y2R2 807 aa19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 GRIN2DO15399 1336 aa19.45■□□□□ 0.7
CCDC88C-203ENST00000389856 RTN2O75298 545 aa19.44■□□□□ 0.7
CCDC88C-203ENST00000389856 SGPL1O95470 568 aa19.44■□□□□ 0.7
CCDC88C-203ENST00000389856 CTSHP09668 335 aa19.44■□□□□ 0.7
CCDC88C-203ENST00000389856 RAB27AP51159 221 aa19.44■□□□□ 0.7
CCDC88C-203ENST00000389856 SMC1AQ14683 1233 aaKnown RBP19.44■□□□□ 0.7
CCDC88C-203ENST00000389856 FAM26DQ5JW98 314 aa19.44■□□□□ 0.7
CCDC88C-203ENST00000389856 NOP9Q86U38 636 aaKnown RBP19.44■□□□□ 0.7
CCDC88C-203ENST00000389856 SLC47A2Q86VL8 602 aa19.44■□□□□ 0.7
CCDC88C-203ENST00000389856 FAM84AQ96KN4 292 aa19.44■□□□□ 0.7
CCDC88C-203ENST00000389856 VIPAS39Q9H9C1 493 aa19.44■□□□□ 0.7
CCDC88C-203ENST00000389856 ST3GAL5Q9UNP4 418 aa19.44■□□□□ 0.7
CCDC88C-203ENST00000389856 TFR2Q9UP52 801 aa19.44■□□□□ 0.7
CCDC88C-203ENST00000389856 CAPN6Q9Y6Q1 641 aa19.44■□□□□ 0.7
CCDC88C-203ENST00000389856 A0A1W2PQ45 241 aaPredicted RBP19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 A0A1W2PQY0 241 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 ANKRD62A6NC57 917 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 DNM1LO00429 736 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 TLR3O15455 904 aaKnown RBP19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 SASH3O75995 380 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 RECQL4O94761 1208 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 MOCS3O95396 460 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 SKIP12755 728 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 ACO1P21399 889 aaKnown RBP19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 PAFAH1B1P43034 410 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 VSNL1P62760 191 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 PAK2Q13177 524 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 TMEM270Q6UE05 265 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 CREG2Q8IUH2 290 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 RBBP8NLQ8NC74 664 aaPredicted RBP19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 TRIM11Q96F44 468 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 HPDLQ96IR7 371 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 XYLT2Q9H1B5 865 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 PARP2Q9UGN5 583 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 CHRNA1P02708 482 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 KCNE1P15382 129 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 GNA15P30679 374 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 POLR2BP30876 1174 aaKnown RBP19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 TNNC1P63316 161 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 NFX1Q12986 1120 aaKnown RBP19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 UBXN11Q5T124 520 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 LRRC52Q8N7C0 313 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 SLC43A3Q8NBI5 491 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 SLC20A1Q8WUM9 679 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 OSBPL9Q96SU4 736 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 ISCUQ9H1K1 167 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 NXF3Q9H4D5 531 aaKnown RBP19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 ABCB6Q9NP58 842 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 SIX4Q9UIU6 781 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 AGAP1Q9UPQ3 857 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 IPPQ9Y573 584 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 PCDHGC5Q9Y5F6 944 aa19.43■□□□□ 0.7
CCDC88C-203ENST00000389856 CES2O00748 559 aa19.42■□□□□ 0.7
CCDC88C-203ENST00000389856 CYP3A5P20815 502 aa19.42■□□□□ 0.7
CCDC88C-203ENST00000389856 PNPLA4P41247 253 aa19.42■□□□□ 0.7
CCDC88C-203ENST00000389856 GALCP54803 685 aa19.42■□□□□ 0.7
CCDC88C-203ENST00000389856 WDR72Q3MJ13 1102 aa19.42■□□□□ 0.7
CCDC88C-203ENST00000389856 GLE1Q53GS7 698 aaKnown RBP19.42■□□□□ 0.7
CCDC88C-203ENST00000389856 FBXO47Q5MNV8 452 aa19.42■□□□□ 0.7
CCDC88C-203ENST00000389856 RHOT2Q8IXI1 618 aa19.42■□□□□ 0.7
CCDC88C-203ENST00000389856 SYCE1Q8N0S2 351 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms