RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 PROSER2Q86WR7 435 aaPredicted RBP25.52■■□□□ 1.68
CLN3-255ENST00000637100 FAM50AQ14320 339 aaKnown RBP25.51■■□□□ 1.67
CLN3-255ENST00000637100 TMEM131LA2VDJ0 1609 aa25.5■■□□□ 1.67
CLN3-255ENST00000637100 UNC13BO14795 1591 aa25.5■■□□□ 1.67
CLN3-255ENST00000637100 ROCK1Q13464 1354 aa25.49■■□□□ 1.67
CLN3-255ENST00000637100 HDGFP51858 240 aaKnown RBP25.47■■□□□ 1.67
CLN3-255ENST00000637100 TBX22Q9Y458 520 aa25.47■■□□□ 1.67
CLN3-255ENST00000637100 GCC2Q8IWJ2 1684 aa25.47■■□□□ 1.67
CLN3-255ENST00000637100 RIMS2Q9UQ26 1411 aa25.46■■□□□ 1.67
CLN3-255ENST00000637100 CHD2O14647 1828 aaKnown RBP25.46■■□□□ 1.67
CLN3-255ENST00000637100 NCOA3Q9Y6Q9 1424 aa25.46■■□□□ 1.67
CLN3-255ENST00000637100 SENP3Q9H4L4 574 aaPredicted RBP25.45■■□□□ 1.66
CLN3-255ENST00000637100 ROBO1Q9Y6N7 1651 aa25.45■■□□□ 1.66
CLN3-255ENST00000637100 MYO5BQ9ULV0 1848 aa25.42■■□□□ 1.66
CLN3-255ENST00000637100 RBM33Q96EV2 1170 aaKnown RBP25.42■■□□□ 1.66
CLN3-255ENST00000637100 MSH6P52701 1360 aa25.42■■□□□ 1.66
CLN3-255ENST00000637100 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.41■■□□□ 1.66
CLN3-255ENST00000637100 SLAIN2Q9P270 581 aa25.41■■□□□ 1.66
CLN3-255ENST00000637100 ADAMTS13Q76LX8 1427 aa25.4■■□□□ 1.66
CLN3-255ENST00000637100 E9PCH4 1651 aa25.4■■□□□ 1.66
CLN3-255ENST00000637100 IQGAP3Q86VI3 1631 aa25.4■■□□□ 1.66
CLN3-255ENST00000637100 PIK3R4Q99570 1358 aa25.39■■□□□ 1.65
CLN3-255ENST00000637100 DIP2AQ14689 1571 aa25.35■■□□□ 1.65
CLN3-255ENST00000637100 BCANQ96GW7 911 aa25.35■■□□□ 1.65
CLN3-255ENST00000637100 PPP1R15AO75807 674 aaPredicted RBP25.33■■□□□ 1.65
CLN3-255ENST00000637100 POTEAQ6S8J7 498 aa25.33■■□□□ 1.65
CLN3-255ENST00000637100 NUP155O75694 1391 aa25.3■■□□□ 1.64
CLN3-255ENST00000637100 JCADQ9P266 1359 aa25.3■■□□□ 1.64
CLN3-255ENST00000637100 C19orf44Q9H6X5 657 aa25.28■■□□□ 1.64
CLN3-255ENST00000637100 COL16A1Q07092 1604 aaPredicted RBP25.27■■□□□ 1.64
CLN3-255ENST00000637100 PHLPP1O60346 1717 aa25.26■■□□□ 1.63
CLN3-255ENST00000637100 CHGAP10645 457 aaKnown RBP25.25■■□□□ 1.63
CLN3-255ENST00000637100 CADPS2Q86UW7 1296 aa25.25■■□□□ 1.63
CLN3-255ENST00000637100 PTPRUQ92729 1446 aa25.25■■□□□ 1.63
CLN3-255ENST00000637100 TRPM2O94759 1503 aa25.24■■□□□ 1.63
CLN3-255ENST00000637100 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.23■■□□□ 1.63
CLN3-255ENST00000637100 AHDC1Q5TGY3 1603 aaPredicted RBP25.23■■□□□ 1.63
CLN3-255ENST00000637100 NUTM2DQ5VT03 806 aaPredicted RBP25.22■■□□□ 1.63
CLN3-255ENST00000637100 AMOTL2Q9Y2J4 779 aa25.21■■□□□ 1.63
CLN3-255ENST00000637100 SETBP1Q9Y6X0 1596 aa25.21■■□□□ 1.63
CLN3-255ENST00000637100 NRXN3Q9Y4C0 1643 aa25.2■■□□□ 1.62
CLN3-255ENST00000637100 SPATA31A6Q5VVP1 1343 aa25.2■■□□□ 1.62
CLN3-255ENST00000637100 DCCP43146 1447 aa25.2■■□□□ 1.62
CLN3-255ENST00000637100 XRN1Q8IZH2 1706 aaKnown RBP25.17■■□□□ 1.62
CLN3-255ENST00000637100 ATF3P18847 181 aa25.16■■□□□ 1.62
CLN3-255ENST00000637100 LRP6O75581 1613 aa25.15■■□□□ 1.62
CLN3-255ENST00000637100 SPHKAPQ2M3C7 1700 aa25.15■■□□□ 1.62
CLN3-255ENST00000637100 BRINP3Q76B58 766 aa25.13■■□□□ 1.61
CLN3-255ENST00000637100 C14orf37Q86TY3 774 aa25.13■■□□□ 1.61
CLN3-255ENST00000637100 SHPRHQ149N8 1683 aa25.13■■□□□ 1.61
CLN3-255ENST00000637100 METP08581 1390 aa25.11■■□□□ 1.61
CLN3-255ENST00000637100 ITGAEP38570 1179 aa25.11■■□□□ 1.61
CLN3-255ENST00000637100 RRBP1Q9P2E9 1410 aaKnown RBP25.11■■□□□ 1.61
CLN3-255ENST00000637100 MST1RQ04912 1400 aa25.09■■□□□ 1.61
CLN3-255ENST00000637100 NEXMIFQ5QGS0 1516 aa25.08■■□□□ 1.61
CLN3-255ENST00000637100 SETD5Q9C0A6 1442 aa25.08■■□□□ 1.61
CLN3-255ENST00000637100 NAIPQ13075 1403 aa25.07■■□□□ 1.6
CLN3-255ENST00000637100 CLTCL1P53675 1640 aa25.05■■□□□ 1.6
CLN3-255ENST00000637100 ZNF772Q68DY9 489 aaPredicted RBP25.05■■□□□ 1.6
CLN3-255ENST00000637100 ASXL1Q8IXJ9 1541 aa25.05■■□□□ 1.6
CLN3-255ENST00000637100 ADGRL3Q9HAR2 1447 aa25.03■■□□□ 1.6
CLN3-255ENST00000637100 PRAG1Q86YV5 1406 aa25.03■■□□□ 1.6
CLN3-255ENST00000637100 NHSL1Q5SYE7 1610 aa25.02■■□□□ 1.6
CLN3-255ENST00000637100 ZNF326Q5BKZ1 582 aaKnown RBP25.02■■□□□ 1.6
CLN3-255ENST00000637100 PPARGC1BQ86YN6 1023 aaKnown RBP25.01■■□□□ 1.59
CLN3-255ENST00000637100 SETD1AO15047 1707 aaKnown RBP24.98■■□□□ 1.59
CLN3-255ENST00000637100 LRRC59Q96AG4 307 aaKnown RBP24.97■■□□□ 1.59
CLN3-255ENST00000637100 CDK12Q9NYV4 1490 aaPredicted RBP24.96■■□□□ 1.59
CLN3-255ENST00000637100 PTCH1Q13635 1447 aa24.96■■□□□ 1.59
CLN3-255ENST00000637100 HFM1A2PYH4 1435 aa24.95■■□□□ 1.59
CLN3-255ENST00000637100 RPGRIP1LQ68CZ1 1315 aa24.95■■□□□ 1.58
CLN3-255ENST00000637100 LAMC1P11047 1609 aa24.95■■□□□ 1.58
CLN3-255ENST00000637100 MEX3CQ5U5Q3 659 aaKnown RBP24.95■■□□□ 1.58
CLN3-255ENST00000637100 KIF1BO60333 1816 aa24.95■■□□□ 1.58
CLN3-255ENST00000637100 NALCNQ8IZF0 1738 aa24.95■■□□□ 1.58
CLN3-255ENST00000637100 VGFO15240 615 aaPredicted RBP24.94■■□□□ 1.58
CLN3-255ENST00000637100 C1orf167Q5SNV9 1468 aa24.92■■□□□ 1.58
CLN3-255ENST00000637100 UPF1Q92900 1129 aaKnown RBP eCLIP24.92■■□□□ 1.58
CLN3-255ENST00000637100 PNPLA6Q8IY17 1366 aa24.92■■□□□ 1.58
CLN3-255ENST00000637100 RXRBP28702 533 aa24.9■■□□□ 1.58
CLN3-255ENST00000637100 ROBO2Q9HCK4 1378 aa24.9■■□□□ 1.58
CLN3-255ENST00000637100 AFF2P51816 1311 aa24.87■■□□□ 1.57
CLN3-255ENST00000637100 SOS2Q07890 1332 aaPredicted RBP24.87■■□□□ 1.57
CLN3-255ENST00000637100 NUTM2BA6NNL0 878 aaPredicted RBP24.87■■□□□ 1.57
CLN3-255ENST00000637100 NUTM2EB1AL46 878 aaPredicted RBP24.87■■□□□ 1.57
CLN3-255ENST00000637100 NUTM2AQ8IVF1 878 aaPredicted RBP24.87■■□□□ 1.57
CLN3-255ENST00000637100 DDX17Q92841 729 aaKnown RBP24.86■■□□□ 1.57
CLN3-255ENST00000637100 TRIM52Q96A61 297 aa24.84■■□□□ 1.57
CLN3-255ENST00000637100 SLC4A1APQ9BWU0 796 aaKnown RBP24.83■■□□□ 1.57
CLN3-255ENST00000637100 PPLO60437 1756 aa24.82■■□□□ 1.56
CLN3-255ENST00000637100 ORAI2Q96SN7 254 aa24.81■■□□□ 1.56
CLN3-255ENST00000637100 RBM6P78332 1123 aaKnown RBP24.78■■□□□ 1.56
CLN3-255ENST00000637100 QTRT2Q9H974 415 aaKnown RBP24.78■■□□□ 1.56
CLN3-255ENST00000637100 TECPR2O15040 1411 aa24.77■■□□□ 1.56
CLN3-255ENST00000637100 SPATA31E1Q6ZUB1 1445 aa24.77■■□□□ 1.56
CLN3-255ENST00000637100 C8orf37Q96NL8 207 aa24.75■■□□□ 1.55
CLN3-255ENST00000637100 RGS12O14924 1447 aa24.75■■□□□ 1.55
CLN3-255ENST00000637100 CDC42BPGQ6DT37 1551 aa24.75■■□□□ 1.55
CLN3-255ENST00000637100 FNBP4Q8N3X1 1017 aaPredicted RBP24.74■■□□□ 1.55
CLN3-255ENST00000637100 COL22A1Q8NFW1 1626 aaPredicted RBP24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms