RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 IQGAP3Q86VI3 1631 aa29.14■■■□□ 2.25
CDX1-202ENST00000616154 ZFYVE9O95405 1425 aa29.14■■■□□ 2.25
CDX1-202ENST00000616154 TMEM94Q12767 1356 aa29.12■■■□□ 2.25
CDX1-202ENST00000616154 NKTRP30414 1462 aaKnown RBP29.11■■■□□ 2.25
CDX1-202ENST00000616154 SENP3Q9H4L4 574 aaPredicted RBP29.08■■■□□ 2.25
CDX1-202ENST00000616154 PLEKHG1Q9ULL1 1385 aa29.08■■■□□ 2.25
CDX1-202ENST00000616154 RIMS2Q9UQ26 1411 aa29.08■■■□□ 2.24
CDX1-202ENST00000616154 CHD2O14647 1828 aaKnown RBP29.06■■■□□ 2.24
CDX1-202ENST00000616154 FAM135BQ49AJ0 1406 aa29.06■■■□□ 2.24
CDX1-202ENST00000616154 HDGFP51858 240 aaKnown RBP29.04■■■□□ 2.24
CDX1-202ENST00000616154 PROSER2Q86WR7 435 aaPredicted RBP29.04■■■□□ 2.24
CDX1-202ENST00000616154 BCANQ96GW7 911 aa29.04■■■□□ 2.24
CDX1-202ENST00000616154 PPP1R15AO75807 674 aaPredicted RBP29.01■■■□□ 2.23
CDX1-202ENST00000616154 PHF23Q9BUL5 403 aaPredicted RBP29.01■■■□□ 2.23
CDX1-202ENST00000616154 NUP155O75694 1391 aa29■■■□□ 2.23
CDX1-202ENST00000616154 ROBO1Q9Y6N7 1651 aa29■■■□□ 2.23
CDX1-202ENST00000616154 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.98■■■□□ 2.23
CDX1-202ENST00000616154 ITGAEP38570 1179 aa28.97■■■□□ 2.23
CDX1-202ENST00000616154 RBM33Q96EV2 1170 aaKnown RBP28.97■■■□□ 2.23
CDX1-202ENST00000616154 CHGAP10645 457 aaKnown RBP28.96■■■□□ 2.23
CDX1-202ENST00000616154 MSH6P52701 1360 aa28.95■■■□□ 2.23
CDX1-202ENST00000616154 DIP2AQ14689 1571 aa28.95■■■□□ 2.23
CDX1-202ENST00000616154 TBX22Q9Y458 520 aa28.94■■■□□ 2.22
CDX1-202ENST00000616154 PPARGC1BQ86YN6 1023 aaKnown RBP28.94■■■□□ 2.22
CDX1-202ENST00000616154 ADAMTS13Q76LX8 1427 aa28.93■■■□□ 2.22
CDX1-202ENST00000616154 SPHKAPQ2M3C7 1700 aa28.92■■■□□ 2.22
CDX1-202ENST00000616154 NCOA3Q9Y6Q9 1424 aa28.89■■■□□ 2.21
CDX1-202ENST00000616154 PIK3R4Q99570 1358 aa28.87■■■□□ 2.21
CDX1-202ENST00000616154 NUTM2DQ5VT03 806 aaPredicted RBP28.87■■■□□ 2.21
CDX1-202ENST00000616154 RRBP1Q9P2E9 1410 aaKnown RBP28.85■■■□□ 2.21
CDX1-202ENST00000616154 SLAIN2Q9P270 581 aa28.85■■■□□ 2.21
CDX1-202ENST00000616154 TRPM2O94759 1503 aa28.84■■■□□ 2.21
CDX1-202ENST00000616154 PHLPP1O60346 1717 aa28.83■■■□□ 2.21
CDX1-202ENST00000616154 RGS17Q9UGC6 210 aaPredicted RBP28.81■■■□□ 2.2
CDX1-202ENST00000616154 NRXN3Q9Y4C0 1643 aa28.8■■■□□ 2.2
CDX1-202ENST00000616154 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.8■■■□□ 2.2
CDX1-202ENST00000616154 SETBP1Q9Y6X0 1596 aa28.79■■■□□ 2.2
CDX1-202ENST00000616154 CLTCL1P53675 1640 aa28.76■■■□□ 2.19
CDX1-202ENST00000616154 NAIPQ13075 1403 aa28.76■■■□□ 2.19
CDX1-202ENST00000616154 PTPRUQ92729 1446 aa28.76■■■□□ 2.19
CDX1-202ENST00000616154 C14orf37Q86TY3 774 aa28.75■■■□□ 2.19
CDX1-202ENST00000616154 COL16A1Q07092 1604 aaPredicted RBP28.75■■■□□ 2.19
CDX1-202ENST00000616154 XRN1Q8IZH2 1706 aaKnown RBP28.75■■■□□ 2.19
CDX1-202ENST00000616154 C19orf44Q9H6X5 657 aa28.73■■■□□ 2.19
CDX1-202ENST00000616154 AMOTL2Q9Y2J4 779 aa28.73■■■□□ 2.19
CDX1-202ENST00000616154 CADPS2Q86UW7 1296 aa28.72■■■□□ 2.19
CDX1-202ENST00000616154 JCADQ9P266 1359 aa28.72■■■□□ 2.19
CDX1-202ENST00000616154 KIF1BO60333 1816 aa28.71■■■□□ 2.19
CDX1-202ENST00000616154 NEXMIFQ5QGS0 1516 aa28.7■■■□□ 2.18
CDX1-202ENST00000616154 ZNF326Q5BKZ1 582 aaKnown RBP28.69■■■□□ 2.18
CDX1-202ENST00000616154 AHDC1Q5TGY3 1603 aaPredicted RBP28.69■■■□□ 2.18
CDX1-202ENST00000616154 ATF3P18847 181 aa28.69■■■□□ 2.18
CDX1-202ENST00000616154 DCCP43146 1447 aa28.66■■■□□ 2.18
CDX1-202ENST00000616154 HFM1A2PYH4 1435 aa28.65■■■□□ 2.18
CDX1-202ENST00000616154 METP08581 1390 aa28.63■■■□□ 2.17
CDX1-202ENST00000616154 POTEAQ6S8J7 498 aa28.63■■■□□ 2.17
CDX1-202ENST00000616154 SHPRHQ149N8 1683 aa28.62■■■□□ 2.17
CDX1-202ENST00000616154 SPATA31A6Q5VVP1 1343 aa28.57■■■□□ 2.16
CDX1-202ENST00000616154 LRP6O75581 1613 aa28.56■■■□□ 2.16
CDX1-202ENST00000616154 BRINP3Q76B58 766 aa28.56■■■□□ 2.16
CDX1-202ENST00000616154 SETD1AO15047 1707 aaKnown RBP28.56■■■□□ 2.16
CDX1-202ENST00000616154 ASXL1Q8IXJ9 1541 aa28.55■■■□□ 2.16
CDX1-202ENST00000616154 TRIM52Q96A61 297 aa28.55■■■□□ 2.16
CDX1-202ENST00000616154 MST1RQ04912 1400 aa28.55■■■□□ 2.16
CDX1-202ENST00000616154 NALCNQ8IZF0 1738 aa28.55■■■□□ 2.16
CDX1-202ENST00000616154 ADGRL3Q9HAR2 1447 aa28.54■■■□□ 2.16
CDX1-202ENST00000616154 NHSL1Q5SYE7 1610 aa28.53■■■□□ 2.16
CDX1-202ENST00000616154 PPLO60437 1756 aa28.51■■■□□ 2.15
CDX1-202ENST00000616154 SLC4A1APQ9BWU0 796 aaKnown RBP28.5■■■□□ 2.15
CDX1-202ENST00000616154 VGFO15240 615 aaPredicted RBP28.48■■■□□ 2.15
CDX1-202ENST00000616154 RPGRIP1LQ68CZ1 1315 aa28.48■■■□□ 2.15
CDX1-202ENST00000616154 PTCH1Q13635 1447 aa28.48■■■□□ 2.15
CDX1-202ENST00000616154 SETD5Q9C0A6 1442 aa28.46■■■□□ 2.15
CDX1-202ENST00000616154 PRAG1Q86YV5 1406 aa28.46■■■□□ 2.15
CDX1-202ENST00000616154 MEX3CQ5U5Q3 659 aaKnown RBP28.44■■■□□ 2.14
CDX1-202ENST00000616154 ZNF772Q68DY9 489 aaPredicted RBP28.41■■■□□ 2.14
CDX1-202ENST00000616154 ROBO2Q9HCK4 1378 aa28.4■■■□□ 2.14
CDX1-202ENST00000616154 LAMC1P11047 1609 aa28.38■■■□□ 2.13
CDX1-202ENST00000616154 C1orf167Q5SNV9 1468 aa28.38■■■□□ 2.13
CDX1-202ENST00000616154 FOXD1Q16676 465 aa28.36■■■□□ 2.13
CDX1-202ENST00000616154 LRRC59Q96AG4 307 aaKnown RBP28.36■■■□□ 2.13
CDX1-202ENST00000616154 CCDC144AA2RUR9 1427 aa28.34■■■□□ 2.13
CDX1-202ENST00000616154 IFT172Q9UG01 1749 aa28.34■■■□□ 2.13
CDX1-202ENST00000616154 NUTM2BA6NNL0 878 aaPredicted RBP28.34■■■□□ 2.13
CDX1-202ENST00000616154 NUTM2EB1AL46 878 aaPredicted RBP28.34■■■□□ 2.13
CDX1-202ENST00000616154 NUTM2AQ8IVF1 878 aaPredicted RBP28.34■■■□□ 2.13
CDX1-202ENST00000616154 PNPLA6Q8IY17 1366 aa28.32■■■□□ 2.12
CDX1-202ENST00000616154 DDX17Q92841 729 aaKnown RBP28.32■■■□□ 2.12
CDX1-202ENST00000616154 SPATA31E1Q6ZUB1 1445 aa28.32■■■□□ 2.12
CDX1-202ENST00000616154 MPHOSPH9Q99550 1183 aa28.28■■■□□ 2.12
CDX1-202ENST00000616154 CDC42BPGQ6DT37 1551 aa28.28■■■□□ 2.12
CDX1-202ENST00000616154 ADGRF5Q8IZF2 1346 aa28.27■■■□□ 2.12
CDX1-202ENST00000616154 ANKRD30BQ9BXX2 1392 aa28.27■■■□□ 2.12
CDX1-202ENST00000616154 AFF2P51816 1311 aa28.26■■■□□ 2.11
CDX1-202ENST00000616154 CDK12Q9NYV4 1490 aaPredicted RBP28.25■■■□□ 2.11
CDX1-202ENST00000616154 ORAI2Q96SN7 254 aa28.24■■■□□ 2.11
CDX1-202ENST00000616154 SOS2Q07890 1332 aaPredicted RBP28.24■■■□□ 2.11
CDX1-202ENST00000616154 TECPR2O15040 1411 aa28.24■■■□□ 2.11
CDX1-202ENST00000616154 KNDC1Q76NI1 1749 aa28.24■■■□□ 2.11
CDX1-202ENST00000616154 RXRBP28702 533 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms