RNA–Protein interactions for RNA: ENST00000607805.5

NECAB3-222, Transcript of N-terminal EF-hand calcium binding protein 3, human

TSL 5

Gene NECAB3, Length 969 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAB3-222	ENST00000607805	ZFYVE9	O95405	1425 aa		32.68	■■■□□ 2.82
NECAB3-222	ENST00000607805	FAM50A	Q14320	339 aa	Known RBP	32.68	■■■□□ 2.82
NECAB3-222	ENST00000607805	SLC26A8	Q96RN1	970 aa		32.68	■■■□□ 2.82
NECAB3-222	ENST00000607805	NKTR	P30414	1462 aa	Known RBP	32.67	■■■□□ 2.82
NECAB3-222	ENST00000607805	PHF23	Q9BUL5	403 aa	Predicted RBP	32.67	■■■□□ 2.82
NECAB3-222	ENST00000607805	ROBO1	Q9Y6N7	1651 aa		32.66	■■■□□ 2.82
NECAB3-222	ENST00000607805		E9PCH4	1651 aa		32.64	■■■□□ 2.82
NECAB3-222	ENST00000607805	PROSER2	Q86WR7	435 aa	Predicted RBP	32.61	■■■□□ 2.81
NECAB3-222	ENST00000607805	PLEKHG1	Q9ULL1	1385 aa		32.59	■■■□□ 2.81
NECAB3-222	ENST00000607805	RGS17	Q9UGC6	210 aa	Predicted RBP	32.59	■■■□□ 2.81
NECAB3-222	ENST00000607805	IQGAP3	Q86VI3	1631 aa		32.58	■■■□□ 2.81
NECAB3-222	ENST00000607805	RIMS2	Q9UQ26	1411 aa		32.57	■■■□□ 2.8
NECAB3-222	ENST00000607805	RBM33	Q96EV2	1170 aa	Known RBP	32.56	■■■□□ 2.8
NECAB3-222	ENST00000607805	ROCK1	Q13464	1354 aa		32.55	■■■□□ 2.8
NECAB3-222	ENST00000607805	MSH6	P52701	1360 aa		32.47	■■■□□ 2.79
NECAB3-222	ENST00000607805	PHLPP1	O60346	1717 aa		32.47	■■■□□ 2.79
NECAB3-222	ENST00000607805	TBX22	Q9Y458	520 aa		32.47	■■■□□ 2.79
NECAB3-222	ENST00000607805	ADAMTS13	Q76LX8	1427 aa		32.46	■■■□□ 2.79
NECAB3-222	ENST00000607805	HDGF	P51858	240 aa	Known RBP	32.46	■■■□□ 2.79
NECAB3-222	ENST00000607805	BCAN	Q96GW7	911 aa		32.46	■■■□□ 2.79
NECAB3-222	ENST00000607805	DIP2A	Q14689	1571 aa		32.45	■■■□□ 2.79
NECAB3-222	ENST00000607805	SLAIN2	Q9P270	581 aa		32.43	■■■□□ 2.78
NECAB3-222	ENST00000607805	NCOA3	Q9Y6Q9	1424 aa		32.43	■■■□□ 2.78
NECAB3-222	ENST00000607805	PPP1R15A	O75807	674 aa	Predicted RBP	32.42	■■■□□ 2.78
NECAB3-222	ENST00000607805	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	32.41	■■■□□ 2.78
NECAB3-222	ENST00000607805	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.4	■■■□□ 2.78
NECAB3-222	ENST00000607805	COL16A1	Q07092	1604 aa	Predicted RBP	32.38	■■■□□ 2.77
NECAB3-222	ENST00000607805	PIK3R4	Q99570	1358 aa		32.37	■■■□□ 2.77
NECAB3-222	ENST00000607805	SPHKAP	Q2M3C7	1700 aa		32.36	■■■□□ 2.77
NECAB3-222	ENST00000607805	NUP155	O75694	1391 aa		32.35	■■■□□ 2.77
NECAB3-222	ENST00000607805	CHGA	P10645	457 aa	Known RBP	32.35	■■■□□ 2.77
NECAB3-222	ENST00000607805	POTEA	Q6S8J7	498 aa		32.34	■■■□□ 2.77
NECAB3-222	ENST00000607805	NRXN3	Q9Y4C0	1643 aa		32.33	■■■□□ 2.77
NECAB3-222	ENST00000607805	NUTM2D	Q5VT03	806 aa	Predicted RBP	32.33	■■■□□ 2.77
NECAB3-222	ENST00000607805	TRPM2	O94759	1503 aa		32.31	■■■□□ 2.76
NECAB3-222	ENST00000607805	JCAD	Q9P266	1359 aa		32.3	■■■□□ 2.76
NECAB3-222	ENST00000607805	PTPRU	Q92729	1446 aa		32.28	■■■□□ 2.76
NECAB3-222	ENST00000607805	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.27	■■■□□ 2.76
NECAB3-222	ENST00000607805	XRN1	Q8IZH2	1706 aa	Known RBP	32.27	■■■□□ 2.76
NECAB3-222	ENST00000607805	SETBP1	Q9Y6X0	1596 aa		32.25	■■■□□ 2.75
NECAB3-222	ENST00000607805	C19orf44	Q9H6X5	657 aa		32.25	■■■□□ 2.75
NECAB3-222	ENST00000607805	SHPRH	Q149N8	1683 aa		32.24	■■■□□ 2.75
NECAB3-222	ENST00000607805	ITGAE	P38570	1179 aa		32.22	■■■□□ 2.75
NECAB3-222	ENST00000607805	CADPS2	Q86UW7	1296 aa		32.21	■■■□□ 2.75
NECAB3-222	ENST00000607805	AMOTL2	Q9Y2J4	779 aa		32.21	■■■□□ 2.75
NECAB3-222	ENST00000607805	LRP6	O75581	1613 aa		32.18	■■■□□ 2.74
NECAB3-222	ENST00000607805	SETD1A	O15047	1707 aa	Known RBP	32.18	■■■□□ 2.74
NECAB3-222	ENST00000607805	C14orf37	Q86TY3	774 aa		32.17	■■■□□ 2.74
NECAB3-222	ENST00000607805	CLTCL1	P53675	1640 aa		32.17	■■■□□ 2.74
NECAB3-222	ENST00000607805	KIF1B	O60333	1816 aa		32.16	■■■□□ 2.74
NECAB3-222	ENST00000607805	DCC	P43146	1447 aa		32.16	■■■□□ 2.74
NECAB3-222	ENST00000607805	ATF3	P18847	181 aa		32.15	■■■□□ 2.74
NECAB3-222	ENST00000607805	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.14	■■■□□ 2.74
NECAB3-222	ENST00000607805	NEXMIF	Q5QGS0	1516 aa		32.13	■■■□□ 2.73
NECAB3-222	ENST00000607805	SPATA31A6	Q5VVP1	1343 aa		32.13	■■■□□ 2.73
NECAB3-222	ENST00000607805	NHSL1	Q5SYE7	1610 aa		32.11	■■■□□ 2.73
NECAB3-222	ENST00000607805	RRBP1	Q9P2E9	1410 aa	Known RBP	32.09	■■■□□ 2.73
NECAB3-222	ENST00000607805	MET	P08581	1390 aa		32.09	■■■□□ 2.73
NECAB3-222	ENST00000607805	BRINP3	Q76B58	766 aa		32.09	■■■□□ 2.73
NECAB3-222	ENST00000607805	MST1R	Q04912	1400 aa		32.07	■■■□□ 2.72
NECAB3-222	ENST00000607805	ASXL1	Q8IXJ9	1541 aa		32.06	■■■□□ 2.72
NECAB3-222	ENST00000607805	NAIP	Q13075	1403 aa		32.06	■■■□□ 2.72
NECAB3-222	ENST00000607805	NALCN	Q8IZF0	1738 aa		32.06	■■■□□ 2.72
NECAB3-222	ENST00000607805	ZNF326	Q5BKZ1	582 aa	Known RBP	32.03	■■■□□ 2.72
NECAB3-222	ENST00000607805	SETD5	Q9C0A6	1442 aa		32	■■■□□ 2.71
NECAB3-222	ENST00000607805	ADGRL3	Q9HAR2	1447 aa		32	■■■□□ 2.71
NECAB3-222	ENST00000607805	ZNF772	Q68DY9	489 aa	Predicted RBP	31.96	■■■□□ 2.71
NECAB3-222	ENST00000607805	LAMC1	P11047	1609 aa		31.94	■■■□□ 2.7
NECAB3-222	ENST00000607805	PPL	O60437	1756 aa		31.94	■■■□□ 2.7
NECAB3-222	ENST00000607805	MEX3C	Q5U5Q3	659 aa	Known RBP	31.93	■■■□□ 2.7
NECAB3-222	ENST00000607805	HFM1	A2PYH4	1435 aa		31.9	■■■□□ 2.7
NECAB3-222	ENST00000607805	PTCH1	Q13635	1447 aa		31.9	■■■□□ 2.7
NECAB3-222	ENST00000607805	PRAG1	Q86YV5	1406 aa		31.9	■■■□□ 2.7
NECAB3-222	ENST00000607805	LRRC59	Q96AG4	307 aa	Known RBP	31.85	■■■□□ 2.69
NECAB3-222	ENST00000607805	C1orf167	Q5SNV9	1468 aa		31.84	■■■□□ 2.69
NECAB3-222	ENST00000607805	CDK12	Q9NYV4	1490 aa	Predicted RBP	31.84	■■■□□ 2.69
NECAB3-222	ENST00000607805	NUTM2B	A6NNL0	878 aa	Predicted RBP	31.84	■■■□□ 2.69
NECAB3-222	ENST00000607805	NUTM2E	B1AL46	878 aa	Predicted RBP	31.84	■■■□□ 2.69
NECAB3-222	ENST00000607805	NUTM2A	Q8IVF1	878 aa	Predicted RBP	31.84	■■■□□ 2.69
NECAB3-222	ENST00000607805	VGF	O15240	615 aa	Predicted RBP	31.83	■■■□□ 2.69
NECAB3-222	ENST00000607805	DDX17	Q92841	729 aa	Known RBP	31.83	■■■□□ 2.69
NECAB3-222	ENST00000607805	PNPLA6	Q8IY17	1366 aa		31.82	■■■□□ 2.69
NECAB3-222	ENST00000607805	ROBO2	Q9HCK4	1378 aa		31.82	■■■□□ 2.69
NECAB3-222	ENST00000607805	RPGRIP1L	Q68CZ1	1315 aa		31.81	■■■□□ 2.68
NECAB3-222	ENST00000607805	UPF1	Q92900	1129 aa	Known RBP eCLIP	31.8	■■■□□ 2.68
NECAB3-222	ENST00000607805	TRIM52	Q96A61	297 aa		31.8	■■■□□ 2.68
NECAB3-222	ENST00000607805	AFF2	P51816	1311 aa		31.79	■■■□□ 2.68
NECAB3-222	ENST00000607805	RXRB	P28702	533 aa		31.79	■■■□□ 2.68
NECAB3-222	ENST00000607805	SLC4A1AP	Q9BWU0	796 aa	Known RBP	31.75	■■■□□ 2.67
NECAB3-222	ENST00000607805	IFT172	Q9UG01	1749 aa		31.75	■■■□□ 2.67
NECAB3-222	ENST00000607805	SOS2	Q07890	1332 aa	Predicted RBP	31.73	■■■□□ 2.67
NECAB3-222	ENST00000607805	ORAI2	Q96SN7	254 aa		31.7	■■■□□ 2.67
NECAB3-222	ENST00000607805	COL22A1	Q8NFW1	1626 aa	Predicted RBP	31.69	■■■□□ 2.66
NECAB3-222	ENST00000607805	CDC42BPG	Q6DT37	1551 aa		31.68	■■■□□ 2.66
NECAB3-222	ENST00000607805	C8orf37	Q96NL8	207 aa		31.67	■■■□□ 2.66
NECAB3-222	ENST00000607805	RGS12	O14924	1447 aa		31.65	■■■□□ 2.66
NECAB3-222	ENST00000607805	QTRT2	Q9H974	415 aa	Known RBP	31.64	■■■□□ 2.66
NECAB3-222	ENST00000607805	SPATA31E1	Q6ZUB1	1445 aa		31.64	■■■□□ 2.66
NECAB3-222	ENST00000607805	RBM6	P78332	1123 aa	Known RBP	31.63	■■■□□ 2.65
NECAB3-222	ENST00000607805	FOXD1	Q16676	465 aa		31.63	■■■□□ 2.65

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms