RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 ITGAEP38570 1179 aa20.2■□□□□ 0.82
RPS28-204ENST00000602140 PROSER2Q86WR7 435 aaPredicted RBP20.19■□□□□ 0.82
RPS28-204ENST00000602140 ZFYVE9O95405 1425 aa20.19■□□□□ 0.82
RPS28-204ENST00000602140 RBM33Q96EV2 1170 aaKnown RBP20.18■□□□□ 0.82
RPS28-204ENST00000602140 PPP1R15AO75807 674 aaPredicted RBP20.17■□□□□ 0.82
RPS28-204ENST00000602140 CHGAP10645 457 aaKnown RBP20.17■□□□□ 0.82
RPS28-204ENST00000602140 RIMS2Q9UQ26 1411 aa20.17■□□□□ 0.82
RPS28-204ENST00000602140 TMEM131LA2VDJ0 1609 aa20.16■□□□□ 0.82
RPS28-204ENST00000602140 E9PCH4 1651 aa20.16■□□□□ 0.82
RPS28-204ENST00000602140 MYO5BQ9ULV0 1848 aa20.16■□□□□ 0.82
RPS28-204ENST00000602140 HDGFP51858 240 aaKnown RBP20.16■□□□□ 0.82
RPS28-204ENST00000602140 PHF23Q9BUL5 403 aaPredicted RBP20.16■□□□□ 0.82
RPS28-204ENST00000602140 PLEKHG1Q9ULL1 1385 aa20.16■□□□□ 0.82
RPS28-204ENST00000602140 IQGAP3Q86VI3 1631 aa20.15■□□□□ 0.82
RPS28-204ENST00000602140 NWD1Q149M9 1564 aa20.14■□□□□ 0.81
RPS28-204ENST00000602140 NKTRP30414 1462 aaKnown RBP20.14■□□□□ 0.81
RPS28-204ENST00000602140 NUP155O75694 1391 aa20.14■□□□□ 0.81
RPS28-204ENST00000602140 FAM135BQ49AJ0 1406 aa20.13■□□□□ 0.81
RPS28-204ENST00000602140 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.12■□□□□ 0.81
RPS28-204ENST00000602140 NUTM2DQ5VT03 806 aaPredicted RBP20.1■□□□□ 0.81
RPS28-204ENST00000602140 TBX22Q9Y458 520 aa20.09■□□□□ 0.81
RPS28-204ENST00000602140 MSH6P52701 1360 aa20.08■□□□□ 0.81
RPS28-204ENST00000602140 CHD2O14647 1828 aaKnown RBP20.07■□□□□ 0.8
RPS28-204ENST00000602140 ROBO1Q9Y6N7 1651 aa20.07■□□□□ 0.8
RPS28-204ENST00000602140 ADAMTS13Q76LX8 1427 aa20.05■□□□□ 0.8
RPS28-204ENST00000602140 SLAIN2Q9P270 581 aa20.04■□□□□ 0.8
RPS28-204ENST00000602140 DIP2AQ14689 1571 aa20.01■□□□□ 0.79
RPS28-204ENST00000602140 PIK3R4Q99570 1358 aa20■□□□□ 0.79
RPS28-204ENST00000602140 C14orf37Q86TY3 774 aa20■□□□□ 0.79
RPS28-204ENST00000602140 RGS17Q9UGC6 210 aaPredicted RBP20■□□□□ 0.79
RPS28-204ENST00000602140 RRBP1Q9P2E9 1410 aaKnown RBP20■□□□□ 0.79
RPS28-204ENST00000602140 NCOA3Q9Y6Q9 1424 aa19.99■□□□□ 0.79
RPS28-204ENST00000602140 SPHKAPQ2M3C7 1700 aa19.99■□□□□ 0.79
RPS28-204ENST00000602140 ZNF326Q5BKZ1 582 aaKnown RBP19.97■□□□□ 0.79
RPS28-204ENST00000602140 TRPM2O94759 1503 aa19.97■□□□□ 0.79
RPS28-204ENST00000602140 AMOTL2Q9Y2J4 779 aa19.96■□□□□ 0.79
RPS28-204ENST00000602140 PTPRUQ92729 1446 aa19.95■□□□□ 0.78
RPS28-204ENST00000602140 NAIPQ13075 1403 aa19.94■□□□□ 0.78
RPS28-204ENST00000602140 PHLPP1O60346 1717 aa19.94■□□□□ 0.78
RPS28-204ENST00000602140 C19orf44Q9H6X5 657 aa19.94■□□□□ 0.78
RPS28-204ENST00000602140 ATF3P18847 181 aa19.93■□□□□ 0.78
RPS28-204ENST00000602140 CADPS2Q86UW7 1296 aa19.93■□□□□ 0.78
RPS28-204ENST00000602140 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.93■□□□□ 0.78
RPS28-204ENST00000602140 SETBP1Q9Y6X0 1596 aa19.91■□□□□ 0.78
RPS28-204ENST00000602140 NRXN3Q9Y4C0 1643 aa19.91■□□□□ 0.78
RPS28-204ENST00000602140 JCADQ9P266 1359 aa19.91■□□□□ 0.78
RPS28-204ENST00000602140 CLTCL1P53675 1640 aa19.91■□□□□ 0.78
RPS28-204ENST00000602140 COL16A1Q07092 1604 aaPredicted RBP19.88■□□□□ 0.77
RPS28-204ENST00000602140 METP08581 1390 aa19.88■□□□□ 0.77
RPS28-204ENST00000602140 POTEAQ6S8J7 498 aa19.88■□□□□ 0.77
RPS28-204ENST00000602140 TRIM52Q96A61 297 aa19.88■□□□□ 0.77
RPS28-204ENST00000602140 XRN1Q8IZH2 1706 aaKnown RBP19.87■□□□□ 0.77
RPS28-204ENST00000602140 NEXMIFQ5QGS0 1516 aa19.86■□□□□ 0.77
RPS28-204ENST00000602140 HFM1A2PYH4 1435 aa19.85■□□□□ 0.77
RPS28-204ENST00000602140 AHDC1Q5TGY3 1603 aaPredicted RBP19.84■□□□□ 0.77
RPS28-204ENST00000602140 DCCP43146 1447 aa19.84■□□□□ 0.77
RPS28-204ENST00000602140 KIF1BO60333 1816 aa19.83■□□□□ 0.77
RPS28-204ENST00000602140 BRINP3Q76B58 766 aa19.83■□□□□ 0.77
RPS28-204ENST00000602140 SLC4A1APQ9BWU0 796 aaKnown RBP19.83■□□□□ 0.77
RPS28-204ENST00000602140 SPATA31A6Q5VVP1 1343 aa19.81■□□□□ 0.76
RPS28-204ENST00000602140 VGFO15240 615 aaPredicted RBP19.79■□□□□ 0.76
RPS28-204ENST00000602140 LRP6O75581 1613 aa19.79■□□□□ 0.76
RPS28-204ENST00000602140 MST1RQ04912 1400 aa19.78■□□□□ 0.76
RPS28-204ENST00000602140 MEX3CQ5U5Q3 659 aaKnown RBP19.78■□□□□ 0.76
RPS28-204ENST00000602140 ADGRL3Q9HAR2 1447 aa19.77■□□□□ 0.76
RPS28-204ENST00000602140 ASXL1Q8IXJ9 1541 aa19.77■□□□□ 0.76
RPS28-204ENST00000602140 SHPRHQ149N8 1683 aa19.77■□□□□ 0.76
RPS28-204ENST00000602140 RPGRIP1LQ68CZ1 1315 aa19.76■□□□□ 0.75
RPS28-204ENST00000602140 NALCNQ8IZF0 1738 aa19.74■□□□□ 0.75
RPS28-204ENST00000602140 FOXD1Q16676 465 aa19.74■□□□□ 0.75
RPS28-204ENST00000602140 NUTM2BA6NNL0 878 aaPredicted RBP19.73■□□□□ 0.75
RPS28-204ENST00000602140 NUTM2EB1AL46 878 aaPredicted RBP19.73■□□□□ 0.75
RPS28-204ENST00000602140 NUTM2AQ8IVF1 878 aaPredicted RBP19.73■□□□□ 0.75
RPS28-204ENST00000602140 SETD1AO15047 1707 aaKnown RBP19.72■□□□□ 0.75
RPS28-204ENST00000602140 SETD5Q9C0A6 1442 aa19.72■□□□□ 0.75
RPS28-204ENST00000602140 NHSL1Q5SYE7 1610 aa19.72■□□□□ 0.75
RPS28-204ENST00000602140 ROBO2Q9HCK4 1378 aa19.71■□□□□ 0.75
RPS28-204ENST00000602140 PTCH1Q13635 1447 aa19.71■□□□□ 0.75
RPS28-204ENST00000602140 ZNF772Q68DY9 489 aaPredicted RBP19.71■□□□□ 0.75
RPS28-204ENST00000602140 DDX17Q92841 729 aaKnown RBP19.71■□□□□ 0.75
RPS28-204ENST00000602140 LRRC59Q96AG4 307 aaKnown RBP19.7■□□□□ 0.74
RPS28-204ENST00000602140 PPLO60437 1756 aa19.7■□□□□ 0.74
RPS28-204ENST00000602140 C1orf167Q5SNV9 1468 aa19.68■□□□□ 0.74
RPS28-204ENST00000602140 CCDC144AA2RUR9 1427 aa19.67■□□□□ 0.74
RPS28-204ENST00000602140 RGL3Q3MIN7 710 aa19.66■□□□□ 0.74
RPS28-204ENST00000602140 MPHOSPH9Q99550 1183 aa19.66■□□□□ 0.74
RPS28-204ENST00000602140 PRAG1Q86YV5 1406 aa19.66■□□□□ 0.74
RPS28-204ENST00000602140 ADGRF5Q8IZF2 1346 aa19.65■□□□□ 0.74
RPS28-204ENST00000602140 ORAI2Q96SN7 254 aa19.64■□□□□ 0.73
RPS28-204ENST00000602140 PNPLA6Q8IY17 1366 aa19.63■□□□□ 0.73
RPS28-204ENST00000602140 AFF2P51816 1311 aa19.63■□□□□ 0.73
RPS28-204ENST00000602140 SPATA31E1Q6ZUB1 1445 aa19.62■□□□□ 0.73
RPS28-204ENST00000602140 RXRBP28702 533 aa19.61■□□□□ 0.73
RPS28-204ENST00000602140 ANKRD30BQ9BXX2 1392 aa19.59■□□□□ 0.73
RPS28-204ENST00000602140 LAMC1P11047 1609 aa19.59■□□□□ 0.73
RPS28-204ENST00000602140 SOS2Q07890 1332 aaPredicted RBP19.59■□□□□ 0.73
RPS28-204ENST00000602140 C8orf37Q96NL8 207 aa19.59■□□□□ 0.73
RPS28-204ENST00000602140 STK26Q9P289 416 aa19.59■□□□□ 0.73
RPS28-204ENST00000602140 IFT172Q9UG01 1749 aa19.57■□□□□ 0.72
RPS28-204ENST00000602140 ADAMTS2O95450 1211 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 119.3 ms