RNA–Protein interactions for RNA: ENST00000593641.3

SSBP4-203, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-203ENST00000593641 ROCK1Q13464 1354 aa34.84■■■■□ 3.17
SSBP4-203ENST00000593641 NWD1Q149M9 1564 aa34.83■■■■□ 3.17
SSBP4-203ENST00000593641 NKTRP30414 1462 aaKnown RBP34.83■■■■□ 3.17
SSBP4-203ENST00000593641 TMEM131LA2VDJ0 1609 aa34.81■■■■□ 3.16
SSBP4-203ENST00000593641 PROSER2Q86WR7 435 aaPredicted RBP34.81■■■■□ 3.16
SSBP4-203ENST00000593641 ZFYVE9O95405 1425 aa34.81■■■■□ 3.16
SSBP4-203ENST00000593641 PPP1R15AO75807 674 aaPredicted RBP34.8■■■■□ 3.16
SSBP4-203ENST00000593641 HDGFP51858 240 aaKnown RBP34.8■■■■□ 3.16
SSBP4-203ENST00000593641 E9PCH4 1651 aa34.79■■■■□ 3.16
SSBP4-203ENST00000593641 IQGAP3Q86VI3 1631 aa34.78■■■■□ 3.16
SSBP4-203ENST00000593641 FAM135BQ49AJ0 1406 aa34.78■■■■□ 3.16
SSBP4-203ENST00000593641 RIMS2Q9UQ26 1411 aa34.78■■■■□ 3.16
SSBP4-203ENST00000593641 PLEKHG1Q9ULL1 1385 aa34.77■■■■□ 3.16
SSBP4-203ENST00000593641 CHD2O14647 1828 aaKnown RBP34.74■■■■□ 3.15
SSBP4-203ENST00000593641 CHGAP10645 457 aaKnown RBP34.73■■■■□ 3.15
SSBP4-203ENST00000593641 RBM33Q96EV2 1170 aaKnown RBP34.73■■■■□ 3.15
SSBP4-203ENST00000593641 ROBO1Q9Y6N7 1651 aa34.73■■■■□ 3.15
SSBP4-203ENST00000593641 MSH6P52701 1360 aa34.71■■■■□ 3.15
SSBP4-203ENST00000593641 ITGAEP38570 1179 aa34.7■■■■□ 3.15
SSBP4-203ENST00000593641 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.69■■■■□ 3.14
SSBP4-203ENST00000593641 NUP155O75694 1391 aa34.68■■■■□ 3.14
SSBP4-203ENST00000593641 TBX22Q9Y458 520 aa34.62■■■■□ 3.13
SSBP4-203ENST00000593641 DIP2AQ14689 1571 aa34.62■■■■□ 3.13
SSBP4-203ENST00000593641 PPARGC1BQ86YN6 1023 aaKnown RBP34.61■■■■□ 3.13
SSBP4-203ENST00000593641 NUTM2DQ5VT03 806 aaPredicted RBP34.59■■■■□ 3.13
SSBP4-203ENST00000593641 ADAMTS13Q76LX8 1427 aa34.56■■■■□ 3.12
SSBP4-203ENST00000593641 SPHKAPQ2M3C7 1700 aa34.55■■■■□ 3.12
SSBP4-203ENST00000593641 SLAIN2Q9P270 581 aa34.55■■■■□ 3.12
SSBP4-203ENST00000593641 NCOA3Q9Y6Q9 1424 aa34.55■■■■□ 3.12
SSBP4-203ENST00000593641 PHLPP1O60346 1717 aa34.54■■■■□ 3.12
SSBP4-203ENST00000593641 PIK3R4Q99570 1358 aa34.53■■■■□ 3.12
SSBP4-203ENST00000593641 C14orf37Q86TY3 774 aa34.52■■■■□ 3.12
SSBP4-203ENST00000593641 TRPM2O94759 1503 aa34.5■■■■□ 3.11
SSBP4-203ENST00000593641 RGS17Q9UGC6 210 aaPredicted RBP34.49■■■■□ 3.11
SSBP4-203ENST00000593641 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.44■■■■□ 3.1
SSBP4-203ENST00000593641 CADPS2Q86UW7 1296 aa34.42■■■■□ 3.1
SSBP4-203ENST00000593641 JCADQ9P266 1359 aa34.41■■■■□ 3.1
SSBP4-203ENST00000593641 RRBP1Q9P2E9 1410 aaKnown RBP34.4■■■■□ 3.1
SSBP4-203ENST00000593641 ATF3P18847 181 aa34.4■■■■□ 3.1
SSBP4-203ENST00000593641 ZNF326Q5BKZ1 582 aaKnown RBP34.4■■■■□ 3.1
SSBP4-203ENST00000593641 C19orf44Q9H6X5 657 aa34.4■■■■□ 3.1
SSBP4-203ENST00000593641 AMOTL2Q9Y2J4 779 aa34.4■■■■□ 3.1
SSBP4-203ENST00000593641 NRXN3Q9Y4C0 1643 aa34.39■■■■□ 3.1
SSBP4-203ENST00000593641 SETBP1Q9Y6X0 1596 aa34.39■■■■□ 3.1
SSBP4-203ENST00000593641 COL16A1Q07092 1604 aaPredicted RBP34.38■■■■□ 3.09
SSBP4-203ENST00000593641 PTPRUQ92729 1446 aa34.37■■■■□ 3.09
SSBP4-203ENST00000593641 CLTCL1P53675 1640 aa34.34■■■■□ 3.09
SSBP4-203ENST00000593641 XRN1Q8IZH2 1706 aaKnown RBP34.34■■■■□ 3.09
SSBP4-203ENST00000593641 KIF1BO60333 1816 aa34.33■■■■□ 3.09
SSBP4-203ENST00000593641 NAIPQ13075 1403 aa34.32■■■■□ 3.08
SSBP4-203ENST00000593641 AHDC1Q5TGY3 1603 aaPredicted RBP34.31■■■■□ 3.08
SSBP4-203ENST00000593641 POTEAQ6S8J7 498 aa34.31■■■■□ 3.08
SSBP4-203ENST00000593641 DCCP43146 1447 aa34.29■■■■□ 3.08
SSBP4-203ENST00000593641 NEXMIFQ5QGS0 1516 aa34.28■■■■□ 3.08
SSBP4-203ENST00000593641 SPATA31A6Q5VVP1 1343 aa34.24■■■■□ 3.07
SSBP4-203ENST00000593641 METP08581 1390 aa34.23■■■■□ 3.07
SSBP4-203ENST00000593641 SHPRHQ149N8 1683 aa34.23■■■■□ 3.07
SSBP4-203ENST00000593641 BRINP3Q76B58 766 aa34.2■■■■□ 3.07
SSBP4-203ENST00000593641 TRIM52Q96A61 297 aa34.2■■■■□ 3.07
SSBP4-203ENST00000593641 HFM1A2PYH4 1435 aa34.19■■■■□ 3.06
SSBP4-203ENST00000593641 MEX3CQ5U5Q3 659 aaKnown RBP34.18■■■■□ 3.06
SSBP4-203ENST00000593641 LRP6O75581 1613 aa34.18■■■■□ 3.06
SSBP4-203ENST00000593641 ASXL1Q8IXJ9 1541 aa34.17■■■■□ 3.06
SSBP4-203ENST00000593641 MST1RQ04912 1400 aa34.14■■■■□ 3.06
SSBP4-203ENST00000593641 ADGRL3Q9HAR2 1447 aa34.13■■■■□ 3.05
SSBP4-203ENST00000593641 NALCNQ8IZF0 1738 aa34.12■■■■□ 3.05
SSBP4-203ENST00000593641 SLC4A1APQ9BWU0 796 aaKnown RBP34.11■■■■□ 3.05
SSBP4-203ENST00000593641 NHSL1Q5SYE7 1610 aa34.11■■■■□ 3.05
SSBP4-203ENST00000593641 SETD1AO15047 1707 aaKnown RBP34.1■■■■□ 3.05
SSBP4-203ENST00000593641 VGFO15240 615 aaPredicted RBP34.1■■■■□ 3.05
SSBP4-203ENST00000593641 ZNF772Q68DY9 489 aaPredicted RBP34.08■■■■□ 3.05
SSBP4-203ENST00000593641 RPGRIP1LQ68CZ1 1315 aa34.04■■■■□ 3.04
SSBP4-203ENST00000593641 PTCH1Q13635 1447 aa34.04■■■■□ 3.04
SSBP4-203ENST00000593641 SETD5Q9C0A6 1442 aa34.04■■■■□ 3.04
SSBP4-203ENST00000593641 PPLO60437 1756 aa34.04■■■■□ 3.04
SSBP4-203ENST00000593641 NUTM2BA6NNL0 878 aaPredicted RBP34.02■■■■□ 3.04
SSBP4-203ENST00000593641 NUTM2EB1AL46 878 aaPredicted RBP34.02■■■■□ 3.04
SSBP4-203ENST00000593641 NUTM2AQ8IVF1 878 aaPredicted RBP34.02■■■■□ 3.04
SSBP4-203ENST00000593641 LRRC59Q96AG4 307 aaKnown RBP34■■■■□ 3.03
SSBP4-203ENST00000593641 ROBO2Q9HCK4 1378 aa33.96■■■■□ 3.03
SSBP4-203ENST00000593641 PRAG1Q86YV5 1406 aa33.95■■■■□ 3.02
SSBP4-203ENST00000593641 C1orf167Q5SNV9 1468 aa33.95■■■■□ 3.02
SSBP4-203ENST00000593641 DDX17Q92841 729 aaKnown RBP33.93■■■■□ 3.02
SSBP4-203ENST00000593641 CCDC144AA2RUR9 1427 aa33.91■■■■□ 3.02
SSBP4-203ENST00000593641 PNPLA6Q8IY17 1366 aa33.9■■■■□ 3.02
SSBP4-203ENST00000593641 FOXD1Q16676 465 aa33.9■■■■□ 3.02
SSBP4-203ENST00000593641 AFF2P51816 1311 aa33.88■■■■□ 3.01
SSBP4-203ENST00000593641 RXRBP28702 533 aa33.88■■■■□ 3.01
SSBP4-203ENST00000593641 LAMC1P11047 1609 aa33.88■■■■□ 3.01
SSBP4-203ENST00000593641 C8orf37Q96NL8 207 aa33.83■■■■□ 3.01
SSBP4-203ENST00000593641 IFT172Q9UG01 1749 aa33.82■■■■□ 3
SSBP4-203ENST00000593641 ORAI2Q96SN7 254 aa33.81■■■■□ 3
SSBP4-203ENST00000593641 CDK12Q9NYV4 1490 aaPredicted RBP33.81■■■■□ 3
SSBP4-203ENST00000593641 RGL3Q3MIN7 710 aa33.8■■■■□ 3
SSBP4-203ENST00000593641 MPHOSPH9Q99550 1183 aa33.8■■■■□ 3
SSBP4-203ENST00000593641 ADGRF5Q8IZF2 1346 aa33.79■■■■□ 3
SSBP4-203ENST00000593641 CDC42BPGQ6DT37 1551 aa33.79■■■■□ 3
SSBP4-203ENST00000593641 SPATA31E1Q6ZUB1 1445 aa33.79■■■■□ 3
SSBP4-203ENST00000593641 ANKRD30BQ9BXX2 1392 aa33.78■■■■□ 3
SSBP4-203ENST00000593641 SOS2Q07890 1332 aaPredicted RBP33.78■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms