RNA–Protein interactions for RNA: ENST00000591782.1

VMP1-212, Transcript of vacuole membrane protein 1, humanhuman

TSL 5

Gene VMP1, Length 729 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-212ENST00000591782 PCDH10Q9P2E7 1040 aa7.73□□□□□ -1.17
VMP1-212ENST00000591782 GIGYF2Q6Y7W6 1299 aaKnown RBP7.72□□□□□ -1.17
VMP1-212ENST00000591782 SAMD7Q7Z3H4 446 aa7.72□□□□□ -1.17
VMP1-212ENST00000591782 KDM4CQ9H3R0 1056 aa7.72□□□□□ -1.17
VMP1-212ENST00000591782 GOLGA8CPA6NN73 597 aa7.71□□□□□ -1.18
VMP1-212ENST00000591782 DAXXQ9UER7 740 aaPredicted RBP7.71□□□□□ -1.18
VMP1-212ENST00000591782 HDGFP51858 240 aaKnown RBP7.7□□□□□ -1.18
VMP1-212ENST00000591782 FAM217BQ9NTX9 383 aaPredicted RBP7.7□□□□□ -1.18
VMP1-212ENST00000591782 MS4A1P11836 297 aa7.69□□□□□ -1.18
VMP1-212ENST00000591782 WNT2BQ93097 391 aa7.69□□□□□ -1.18
VMP1-212ENST00000591782 DDX11L8A8MPP1 907 aa7.68□□□□□ -1.18
VMP1-212ENST00000591782 RNF40O75150 1001 aa7.68□□□□□ -1.18
VMP1-212ENST00000591782 SSTR3P32745 418 aaPredicted RBP7.68□□□□□ -1.18
VMP1-212ENST00000591782 ANKK1Q8NFD2 765 aa7.68□□□□□ -1.18
VMP1-212ENST00000591782 LRCH3Q96II8 777 aa7.68□□□□□ -1.18
VMP1-212ENST00000591782 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.68□□□□□ -1.18
VMP1-212ENST00000591782 BCAMP50895 628 aa7.67□□□□□ -1.18
VMP1-212ENST00000591782 KCTD12Q96CX2 325 aaKnown RBP7.67□□□□□ -1.18
VMP1-212ENST00000591782 SOWAHBA6NEL2 793 aa7.66□□□□□ -1.18
VMP1-212ENST00000591782 SLC10A3P09131 477 aa7.66□□□□□ -1.18
VMP1-212ENST00000591782 SPNS2Q8IVW8 549 aa7.66□□□□□ -1.18
VMP1-212ENST00000591782 SULF1Q8IWU6 871 aa7.66□□□□□ -1.18
VMP1-212ENST00000591782 SLF2Q8IX21 1173 aa7.66□□□□□ -1.18
VMP1-212ENST00000591782 MYT1LQ9UL68 1186 aa7.66□□□□□ -1.18
VMP1-212ENST00000591782 CD46P15529 392 aa7.65□□□□□ -1.18
VMP1-212ENST00000591782 SLC4A3P48751 1232 aa7.65□□□□□ -1.18
VMP1-212ENST00000591782 RDH13Q8NBN7 331 aa7.65□□□□□ -1.18
VMP1-212ENST00000591782 FAM117AQ9C073 453 aa7.65□□□□□ -1.18
VMP1-212ENST00000591782 THSD4Q6ZMP0 1018 aa7.63□□□□□ -1.19
VMP1-212ENST00000591782 BEGAINQ9BUH8 593 aa7.63□□□□□ -1.19
VMP1-212ENST00000591782 HPS5Q9UPZ3 1129 aa7.63□□□□□ -1.19
VMP1-212ENST00000591782 RSPH4AQ5TD94 716 aa7.62□□□□□ -1.19
VMP1-212ENST00000591782 IL27Q8NEV9 243 aa7.62□□□□□ -1.19
VMP1-212ENST00000591782 TSR3Q9UJK0 312 aaKnown RBP7.62□□□□□ -1.19
VMP1-212ENST00000591782 PLEKHG3A1L390 1219 aa7.61□□□□□ -1.19
VMP1-212ENST00000591782 CFHP08603 1231 aa7.61□□□□□ -1.19
VMP1-212ENST00000591782 PPP4CP60510 307 aa7.61□□□□□ -1.19
VMP1-212ENST00000591782 DDRGK1Q96HY6 314 aa7.61□□□□□ -1.19
VMP1-212ENST00000591782 GCGRP47871 477 aa7.6□□□□□ -1.19
VMP1-212ENST00000591782 PTPN5P54829 565 aa7.6□□□□□ -1.19
VMP1-212ENST00000591782 NECTIN2Q92692 538 aa7.6□□□□□ -1.19
VMP1-212ENST00000591782 RNF166Q96A37 237 aaPredicted RBP7.6□□□□□ -1.19
VMP1-212ENST00000591782 WBP1LQ9NX94 342 aa7.6□□□□□ -1.19
VMP1-212ENST00000591782 SPIRE2Q8WWL2 714 aa7.58□□□□□ -1.2
VMP1-212ENST00000591782 KDM4AO75164 1064 aa7.57□□□□□ -1.2
VMP1-212ENST00000591782 APLP1P51693 650 aa7.57□□□□□ -1.2
VMP1-212ENST00000591782 KMT5BQ4FZB7 885 aa7.57□□□□□ -1.2
VMP1-212ENST00000591782 NUTM1Q86Y26 1132 aa7.57□□□□□ -1.2
VMP1-212ENST00000591782 FUT2Q10981 343 aa7.56□□□□□ -1.2
VMP1-212ENST00000591782 MMRN1Q13201 1228 aa7.56□□□□□ -1.2
VMP1-212ENST00000591782 TBC1D2Q9BYX2 928 aa7.56□□□□□ -1.2
VMP1-212ENST00000591782 ACTN4O43707 911 aaKnown RBP7.55□□□□□ -1.2
VMP1-212ENST00000591782 TMEM132AQ24JP5 1023 aa7.54□□□□□ -1.2
VMP1-212ENST00000591782 MYSM1Q5VVJ2 828 aa7.54□□□□□ -1.2
VMP1-212ENST00000591782 PRR14Q9BWN1 585 aa7.54□□□□□ -1.2
VMP1-212ENST00000591782 HOXA2O43364 376 aa7.53□□□□□ -1.2
VMP1-212ENST00000591782 DIXDC1Q155Q3 683 aa7.53□□□□□ -1.2
VMP1-212ENST00000591782 PUS10Q3MIT2 529 aaKnown RBP7.53□□□□□ -1.2
VMP1-212ENST00000591782 NYAP1Q6ZVC0 841 aa7.53□□□□□ -1.2
VMP1-212ENST00000591782 HLA-CQ95604 372 aa7.53□□□□□ -1.2
VMP1-212ENST00000591782 MOXD2PA6NHM9 499 aa7.52□□□□□ -1.21
VMP1-212ENST00000591782 NDUFV2P19404 249 aa7.52□□□□□ -1.21
VMP1-212ENST00000591782 ATP6V1AP38606 617 aa7.52□□□□□ -1.21
VMP1-212ENST00000591782 USP46P62068 366 aa7.52□□□□□ -1.21
VMP1-212ENST00000591782 SH3D19Q5HYK7 790 aa7.52□□□□□ -1.21
VMP1-212ENST00000591782 RSPH6AQ9H0K4 717 aa7.52□□□□□ -1.21
VMP1-212ENST00000591782 HCSTQ9UBK5 93 aa7.52□□□□□ -1.21
VMP1-212ENST00000591782 GUCA2AQ02747 115 aa7.51□□□□□ -1.21
VMP1-212ENST00000591782 POLR3EQ9NVU0 708 aa7.51□□□□□ -1.21
VMP1-212ENST00000591782 PCDHB3Q9Y5E6 796 aa7.51□□□□□ -1.21
VMP1-212ENST00000591782 SKIV2LQ15477 1246 aaKnown RBP7.5□□□□□ -1.21
VMP1-212ENST00000591782 GRIPAP1Q4V328 841 aa7.5□□□□□ -1.21
VMP1-212ENST00000591782 RSBN1LQ6PCB5 846 aaPredicted RBP7.5□□□□□ -1.21
VMP1-212ENST00000591782 BLOC1S3Q6QNY0 202 aa7.5□□□□□ -1.21
VMP1-212ENST00000591782 RIC3Q7Z5B4 369 aa7.5□□□□□ -1.21
VMP1-212ENST00000591782 LIMD1Q9UGP4 676 aa7.5□□□□□ -1.21
VMP1-212ENST00000591782 CLK2P49760 499 aaKnown RBP7.49□□□□□ -1.21
VMP1-212ENST00000591782 COPS2P61201 443 aa7.49□□□□□ -1.21
VMP1-212ENST00000591782 MORN1Q5T089 497 aa7.49□□□□□ -1.21
VMP1-212ENST00000591782 GOPCQ9HD26 462 aa7.49□□□□□ -1.21
VMP1-212ENST00000591782 SPTLC1O15269 473 aa7.48□□□□□ -1.21
VMP1-212ENST00000591782 FDX1P10109 184 aa7.48□□□□□ -1.21
VMP1-212ENST00000591782 CSPP1Q1MSJ5 1256 aa7.48□□□□□ -1.21
VMP1-212ENST00000591782 PROCA1Q8NCQ7 364 aaPredicted RBP7.48□□□□□ -1.21
VMP1-212ENST00000591782 SLC27A5Q9Y2P5 690 aa7.48□□□□□ -1.21
VMP1-212ENST00000591782 MTRQ99707 1265 aa7.47□□□□□ -1.21
VMP1-212ENST00000591782 ATP1B4Q9UN42 357 aaPredicted RBP7.47□□□□□ -1.21
VMP1-212ENST00000591782 PCDHGC3Q9UN70 934 aa7.47□□□□□ -1.21
VMP1-212ENST00000591782 PCDHB15Q9Y5E8 787 aa7.47□□□□□ -1.21
VMP1-212ENST00000591782 GJA5P36382 358 aa7.46□□□□□ -1.22
VMP1-212ENST00000591782 SCUBE3Q8IX30 993 aa7.46□□□□□ -1.22
VMP1-212ENST00000591782 PCMTD1Q96MG8 357 aaPredicted RBP7.46□□□□□ -1.22
VMP1-212ENST00000591782 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.46□□□□□ -1.223e-6■■□□□ 12.1
VMP1-212ENST00000591782 NR1I2O75469 434 aa7.45□□□□□ -1.22
VMP1-212ENST00000591782 TJAP1Q5JTD0 557 aa7.45□□□□□ -1.22
VMP1-212ENST00000591782 QPCTQ16769 361 aa7.44□□□□□ -1.22
VMP1-212ENST00000591782 TUSC1Q2TAM9 212 aa7.44□□□□□ -1.22
VMP1-212ENST00000591782 FBXO31Q5XUX0 539 aaPredicted RBP7.44□□□□□ -1.22
VMP1-212ENST00000591782 RNF19BQ6ZMZ0 732 aa7.44□□□□□ -1.22
VMP1-212ENST00000591782 SYMPKQ92797 1274 aaKnown RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms