RNA–Protein interactions for RNA: ENST00000590696.1

DDX39A-215, Transcript of DExD-box helicase 39A, human

TSL 4

Gene DDX39A, Length 563 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-215	ENST00000590696	TMEM94	Q12767	1356 aa		33.39	■■■□□ 2.94
DDX39A-215	ENST00000590696	MYO5B	Q9ULV0	1848 aa		33.37	■■■□□ 2.93
DDX39A-215	ENST00000590696	PROSER2	Q86WR7	435 aa	Predicted RBP	33.37	■■■□□ 2.93
DDX39A-215	ENST00000590696	ZFYVE9	O95405	1425 aa		33.36	■■■□□ 2.93
DDX39A-215	ENST00000590696	RIMS2	Q9UQ26	1411 aa		33.35	■■■□□ 2.93
DDX39A-215	ENST00000590696	TMEM131L	A2VDJ0	1609 aa		33.35	■■■□□ 2.93
DDX39A-215	ENST00000590696		E9PCH4	1651 aa		33.34	■■■□□ 2.93
DDX39A-215	ENST00000590696	HDGF	P51858	240 aa	Known RBP	33.34	■■■□□ 2.93
DDX39A-215	ENST00000590696	RBM33	Q96EV2	1170 aa	Known RBP	33.34	■■■□□ 2.93
DDX39A-215	ENST00000590696	CHGA	P10645	457 aa	Known RBP	33.33	■■■□□ 2.93
DDX39A-215	ENST00000590696	IQGAP3	Q86VI3	1631 aa		33.32	■■■□□ 2.92
DDX39A-215	ENST00000590696	PPP1R15A	O75807	674 aa	Predicted RBP	33.32	■■■□□ 2.92
DDX39A-215	ENST00000590696	PLEKHG1	Q9ULL1	1385 aa		33.32	■■■□□ 2.92
DDX39A-215	ENST00000590696	NUP155	O75694	1391 aa		33.31	■■■□□ 2.92
DDX39A-215	ENST00000590696	NWD1	Q149M9	1564 aa		33.3	■■■□□ 2.92
DDX39A-215	ENST00000590696	PHF23	Q9BUL5	403 aa	Predicted RBP	33.29	■■■□□ 2.92
DDX39A-215	ENST00000590696	NKTR	P30414	1462 aa	Known RBP	33.29	■■■□□ 2.92
DDX39A-215	ENST00000590696	FAM135B	Q49AJ0	1406 aa		33.28	■■■□□ 2.92
DDX39A-215	ENST00000590696	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	33.26	■■■□□ 2.91
DDX39A-215	ENST00000590696	NUTM2D	Q5VT03	806 aa	Predicted RBP	33.23	■■■□□ 2.91
DDX39A-215	ENST00000590696	CHD2	O14647	1828 aa	Known RBP	33.21	■■■□□ 2.91
DDX39A-215	ENST00000590696	TBX22	Q9Y458	520 aa		33.21	■■■□□ 2.91
DDX39A-215	ENST00000590696	MSH6	P52701	1360 aa		33.19	■■■□□ 2.9
DDX39A-215	ENST00000590696	ROBO1	Q9Y6N7	1651 aa		33.17	■■■□□ 2.9
DDX39A-215	ENST00000590696	ADAMTS13	Q76LX8	1427 aa		33.14	■■■□□ 2.9
DDX39A-215	ENST00000590696	SLAIN2	Q9P270	581 aa		33.11	■■■□□ 2.89
DDX39A-215	ENST00000590696	DIP2A	Q14689	1571 aa		33.09	■■■□□ 2.89
DDX39A-215	ENST00000590696	RRBP1	Q9P2E9	1410 aa	Known RBP	33.08	■■■□□ 2.89
DDX39A-215	ENST00000590696	PIK3R4	Q99570	1358 aa		33.07	■■■□□ 2.88
DDX39A-215	ENST00000590696	SPHKAP	Q2M3C7	1700 aa		33.06	■■■□□ 2.88
DDX39A-215	ENST00000590696	NCOA3	Q9Y6Q9	1424 aa		33.06	■■■□□ 2.88
DDX39A-215	ENST00000590696	C14orf37	Q86TY3	774 aa		33.04	■■■□□ 2.88
DDX39A-215	ENST00000590696	RGS17	Q9UGC6	210 aa	Predicted RBP	33.03	■■■□□ 2.88
DDX39A-215	ENST00000590696	TRPM2	O94759	1503 aa		33.02	■■■□□ 2.88
DDX39A-215	ENST00000590696	ZNF326	Q5BKZ1	582 aa	Known RBP	33	■■■□□ 2.87
DDX39A-215	ENST00000590696	AMOTL2	Q9Y2J4	779 aa		33	■■■□□ 2.87
DDX39A-215	ENST00000590696	NAIP	Q13075	1403 aa		32.99	■■■□□ 2.87
DDX39A-215	ENST00000590696	PHLPP1	O60346	1717 aa		32.98	■■■□□ 2.87
DDX39A-215	ENST00000590696	PTPRU	Q92729	1446 aa		32.98	■■■□□ 2.87
DDX39A-215	ENST00000590696	C19orf44	Q9H6X5	657 aa		32.97	■■■□□ 2.87
DDX39A-215	ENST00000590696	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.94	■■■□□ 2.86
DDX39A-215	ENST00000590696	CADPS2	Q86UW7	1296 aa		32.94	■■■□□ 2.86
DDX39A-215	ENST00000590696	NRXN3	Q9Y4C0	1643 aa		32.93	■■■□□ 2.86
DDX39A-215	ENST00000590696	ATF3	P18847	181 aa		32.93	■■■□□ 2.86
DDX39A-215	ENST00000590696	SETBP1	Q9Y6X0	1596 aa		32.92	■■■□□ 2.86
DDX39A-215	ENST00000590696	CLTCL1	P53675	1640 aa		32.92	■■■□□ 2.86
DDX39A-215	ENST00000590696	JCAD	Q9P266	1359 aa		32.9	■■■□□ 2.86
DDX39A-215	ENST00000590696	TRIM52	Q96A61	297 aa		32.88	■■■□□ 2.85
DDX39A-215	ENST00000590696	COL16A1	Q07092	1604 aa	Predicted RBP	32.86	■■■□□ 2.85
DDX39A-215	ENST00000590696	XRN1	Q8IZH2	1706 aa	Known RBP	32.85	■■■□□ 2.85
DDX39A-215	ENST00000590696	MET	P08581	1390 aa		32.85	■■■□□ 2.85
DDX39A-215	ENST00000590696	POTEA	Q6S8J7	498 aa		32.85	■■■□□ 2.85
DDX39A-215	ENST00000590696	NEXMIF	Q5QGS0	1516 aa		32.85	■■■□□ 2.85
DDX39A-215	ENST00000590696	HFM1	A2PYH4	1435 aa		32.84	■■■□□ 2.85
DDX39A-215	ENST00000590696	KIF1B	O60333	1816 aa		32.83	■■■□□ 2.85
DDX39A-215	ENST00000590696	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.79	■■■□□ 2.84
DDX39A-215	ENST00000590696	DCC	P43146	1447 aa		32.78	■■■□□ 2.84
DDX39A-215	ENST00000590696	BRINP3	Q76B58	766 aa		32.78	■■■□□ 2.84
DDX39A-215	ENST00000590696	SLC4A1AP	Q9BWU0	796 aa	Known RBP	32.78	■■■□□ 2.84
DDX39A-215	ENST00000590696	SPATA31A6	Q5VVP1	1343 aa		32.74	■■■□□ 2.83
DDX39A-215	ENST00000590696	VGF	O15240	615 aa	Predicted RBP	32.73	■■■□□ 2.83
DDX39A-215	ENST00000590696	MST1R	Q04912	1400 aa		32.7	■■■□□ 2.83
DDX39A-215	ENST00000590696	LRP6	O75581	1613 aa		32.69	■■■□□ 2.82
DDX39A-215	ENST00000590696	SHPRH	Q149N8	1683 aa		32.68	■■■□□ 2.82
DDX39A-215	ENST00000590696	ADGRL3	Q9HAR2	1447 aa		32.68	■■■□□ 2.82
DDX39A-215	ENST00000590696	ASXL1	Q8IXJ9	1541 aa		32.67	■■■□□ 2.82
DDX39A-215	ENST00000590696	MEX3C	Q5U5Q3	659 aa	Known RBP	32.67	■■■□□ 2.82
DDX39A-215	ENST00000590696	RPGRIP1L	Q68CZ1	1315 aa		32.67	■■■□□ 2.82
DDX39A-215	ENST00000590696	FOXD1	Q16676	465 aa		32.64	■■■□□ 2.82
DDX39A-215	ENST00000590696	NALCN	Q8IZF0	1738 aa		32.63	■■■□□ 2.81
DDX39A-215	ENST00000590696	SETD1A	O15047	1707 aa	Known RBP	32.62	■■■□□ 2.81
DDX39A-215	ENST00000590696	NHSL1	Q5SYE7	1610 aa		32.59	■■■□□ 2.81
DDX39A-215	ENST00000590696	PPL	O60437	1756 aa		32.59	■■■□□ 2.81
DDX39A-215	ENST00000590696	PTCH1	Q13635	1447 aa		32.59	■■■□□ 2.81
DDX39A-215	ENST00000590696	SETD5	Q9C0A6	1442 aa		32.59	■■■□□ 2.81
DDX39A-215	ENST00000590696	NUTM2B	A6NNL0	878 aa	Predicted RBP	32.58	■■■□□ 2.81
DDX39A-215	ENST00000590696	NUTM2E	B1AL46	878 aa	Predicted RBP	32.58	■■■□□ 2.81
DDX39A-215	ENST00000590696	NUTM2A	Q8IVF1	878 aa	Predicted RBP	32.58	■■■□□ 2.81
DDX39A-215	ENST00000590696	ROBO2	Q9HCK4	1378 aa		32.58	■■■□□ 2.81
DDX39A-215	ENST00000590696	DDX17	Q92841	729 aa	Known RBP	32.57	■■■□□ 2.8
DDX39A-215	ENST00000590696	ZNF772	Q68DY9	489 aa	Predicted RBP	32.56	■■■□□ 2.8
DDX39A-215	ENST00000590696	LRRC59	Q96AG4	307 aa	Known RBP	32.56	■■■□□ 2.8
DDX39A-215	ENST00000590696	C1orf167	Q5SNV9	1468 aa		32.53	■■■□□ 2.8
DDX39A-215	ENST00000590696	CCDC144A	A2RUR9	1427 aa		32.52	■■■□□ 2.8
DDX39A-215	ENST00000590696	MPHOSPH9	Q99550	1183 aa		32.52	■■■□□ 2.8
DDX39A-215	ENST00000590696	PRAG1	Q86YV5	1406 aa		32.51	■■■□□ 2.79
DDX39A-215	ENST00000590696	RGL3	Q3MIN7	710 aa		32.5	■■■□□ 2.79
DDX39A-215	ENST00000590696	ADGRF5	Q8IZF2	1346 aa		32.49	■■■□□ 2.79
DDX39A-215	ENST00000590696	ORAI2	Q96SN7	254 aa		32.46	■■■□□ 2.79
DDX39A-215	ENST00000590696	PNPLA6	Q8IY17	1366 aa		32.45	■■■□□ 2.79
DDX39A-215	ENST00000590696	SPATA31E1	Q6ZUB1	1445 aa		32.44	■■■□□ 2.78
DDX39A-215	ENST00000590696	AFF2	P51816	1311 aa		32.42	■■■□□ 2.78
DDX39A-215	ENST00000590696	RXRB	P28702	533 aa		32.4	■■■□□ 2.78
DDX39A-215	ENST00000590696	ANKRD30B	Q9BXX2	1392 aa		32.4	■■■□□ 2.78
DDX39A-215	ENST00000590696	LAMC1	P11047	1609 aa		32.4	■■■□□ 2.78
DDX39A-215	ENST00000590696	IFT172	Q9UG01	1749 aa		32.38	■■■□□ 2.77
DDX39A-215	ENST00000590696	STK26	Q9P289	416 aa		32.38	■■■□□ 2.77
DDX39A-215	ENST00000590696	SOS2	Q07890	1332 aa	Predicted RBP	32.37	■■■□□ 2.77
DDX39A-215	ENST00000590696	C8orf37	Q96NL8	207 aa		32.37	■■■□□ 2.77
DDX39A-215	ENST00000590696	ACIN1	Q9UKV3	1341 aa	Known RBP	32.33	■■■□□ 2.77

Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms