RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 PDE4DQ08499 809 aa12.28□□□□□ -0.44
NUP88-213ENST00000576862 SOWAHBA6NEL2 793 aa12.27□□□□□ -0.45
NUP88-213ENST00000576862 BCAMP50895 628 aa12.27□□□□□ -0.45
NUP88-213ENST00000576862 MMRN1Q13201 1228 aa12.27□□□□□ -0.45
NUP88-213ENST00000576862 DAXXQ9UER7 740 aaPredicted RBP12.27□□□□□ -0.45
NUP88-213ENST00000576862 THSD4Q6ZMP0 1018 aa12.26□□□□□ -0.45
NUP88-213ENST00000576862 LRCH3Q96II8 777 aa12.26□□□□□ -0.45
NUP88-213ENST00000576862 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.26□□□□□ -0.45
NUP88-213ENST00000576862 PARP9Q8IXQ6 854 aa12.25□□□□□ -0.45
NUP88-213ENST00000576862 RNF166Q96A37 237 aaPredicted RBP12.25□□□□□ -0.45
NUP88-213ENST00000576862 GPCPD1Q9NPB8 672 aa12.25□□□□□ -0.45
NUP88-213ENST00000576862 CLCN1P35523 988 aa12.24□□□□□ -0.45
NUP88-213ENST00000576862 HDGFP51858 240 aaKnown RBP12.24□□□□□ -0.45
NUP88-213ENST00000576862 TTLL12Q14166 644 aaPredicted RBP12.22□□□□□ -0.45
NUP88-213ENST00000576862 SLC10A3P09131 477 aa12.21□□□□□ -0.45
NUP88-213ENST00000576862 GIGYF2Q6Y7W6 1299 aaKnown RBP12.21□□□□□ -0.45
NUP88-213ENST00000576862 SLF2Q8IX21 1173 aa12.21□□□□□ -0.45
NUP88-213ENST00000576862 FAM217BQ9NTX9 383 aaPredicted RBP12.2□□□□□ -0.46
NUP88-213ENST00000576862 RNF40O75150 1001 aa12.19□□□□□ -0.46
NUP88-213ENST00000576862 HPS5Q9UPZ3 1129 aa12.19□□□□□ -0.46
NUP88-213ENST00000576862 DDX11L8A8MPP1 907 aa12.18□□□□□ -0.46
NUP88-213ENST00000576862 GPBP1L1Q9HC44 474 aaPredicted RBP12.18□□□□□ -0.46
NUP88-213ENST00000576862 WBP1LQ9NX94 342 aa12.18□□□□□ -0.46
NUP88-213ENST00000576862 TSR3Q9UJK0 312 aaKnown RBP12.18□□□□□ -0.46
NUP88-213ENST00000576862 BRPF1P55201 1214 aaPredicted RBP12.17□□□□□ -0.46
NUP88-213ENST00000576862 SSTR3P32745 418 aaPredicted RBP12.16□□□□□ -0.46
NUP88-213ENST00000576862 PTPN5P54829 565 aa12.16□□□□□ -0.46
NUP88-213ENST00000576862 MS4A1P11836 297 aa12.15□□□□□ -0.46
NUP88-213ENST00000576862 CD46P15529 392 aa12.15□□□□□ -0.46
NUP88-213ENST00000576862 PPP4CP60510 307 aa12.15□□□□□ -0.46
NUP88-213ENST00000576862 SULF1Q8IWU6 871 aa12.15□□□□□ -0.46
NUP88-213ENST00000576862 SLC4A3P48751 1232 aa12.14□□□□□ -0.47
NUP88-213ENST00000576862 RDH13Q8NBN7 331 aa12.13□□□□□ -0.47
NUP88-213ENST00000576862 KDM4CQ9H3R0 1056 aa12.13□□□□□ -0.47
NUP88-213ENST00000576862 NEUROD2Q15784 382 aa12.12□□□□□ -0.47
NUP88-213ENST00000576862 CFHP08603 1231 aa12.1□□□□□ -0.47
NUP88-213ENST00000576862 APLP1P51693 650 aa12.1□□□□□ -0.47
NUP88-213ENST00000576862 HCSTQ9UBK5 93 aa12.1□□□□□ -0.47
NUP88-213ENST00000576862 GCGRP47871 477 aa12.09□□□□□ -0.47
NUP88-213ENST00000576862 RSPH4AQ5TD94 716 aa12.09□□□□□ -0.47
NUP88-213ENST00000576862 NECTIN2Q92692 538 aa12.09□□□□□ -0.47
NUP88-213ENST00000576862 NYAP1Q6ZVC0 841 aa12.06□□□□□ -0.48
NUP88-213ENST00000576862 BEGAINQ9BUH8 593 aa12.06□□□□□ -0.48
NUP88-213ENST00000576862 FAM117AQ9C073 453 aa12.05□□□□□ -0.48
NUP88-213ENST00000576862 PLSCR2Q9NRY7 297 aa12.05□□□□□ -0.48
NUP88-213ENST00000576862 ACTN4O43707 911 aaKnown RBP12.04□□□□□ -0.48
NUP88-213ENST00000576862 KMT5BQ4FZB7 885 aa12.04□□□□□ -0.48
NUP88-213ENST00000576862 PLEKHG3A1L390 1219 aa12.01□□□□□ -0.49
NUP88-213ENST00000576862 FUT2Q10981 343 aa12.01□□□□□ -0.49
NUP88-213ENST00000576862 PRR14Q9BWN1 585 aa12.01□□□□□ -0.49
NUP88-213ENST00000576862 KDM4AO75164 1064 aa12□□□□□ -0.49
NUP88-213ENST00000576862 SPIRE2Q8WWL2 714 aa12□□□□□ -0.49
NUP88-213ENST00000576862 TBC1D2Q9BYX2 928 aa11.98□□□□□ -0.49
NUP88-213ENST00000576862 PUS10Q3MIT2 529 aaKnown RBP11.97□□□□□ -0.49
NUP88-213ENST00000576862 NUTM1Q86Y26 1132 aa11.97□□□□□ -0.49
NUP88-213ENST00000576862 DDRGK1Q96HY6 314 aa11.97□□□□□ -0.49
NUP88-213ENST00000576862 PCDHB3Q9Y5E6 796 aa11.97□□□□□ -0.49
NUP88-213ENST00000576862 HOXA2O43364 376 aa11.96□□□□□ -0.49
NUP88-213ENST00000576862 ATP6V1AP38606 617 aa11.96□□□□□ -0.49
NUP88-213ENST00000576862 TJAP1Q5JTD0 557 aa11.96□□□□□ -0.49
NUP88-213ENST00000576862 MORN1Q5T089 497 aa11.96□□□□□ -0.49
NUP88-213ENST00000576862 IL27Q8NEV9 243 aa11.96□□□□□ -0.49
NUP88-213ENST00000576862 USP46P62068 366 aa11.95□□□□□ -0.5
NUP88-213ENST00000576862 BLOC1S3Q6QNY0 202 aa11.95□□□□□ -0.5
NUP88-213ENST00000576862 HLA-CQ95604 372 aa11.95□□□□□ -0.5
NUP88-213ENST00000576862 MTRQ99707 1265 aa11.95□□□□□ -0.5
NUP88-213ENST00000576862 COPS2P61201 443 aa11.93□□□□□ -0.5
NUP88-213ENST00000576862 MOXD2PA6NHM9 499 aa11.92□□□□□ -0.5
NUP88-213ENST00000576862 NDUFV2P19404 249 aa11.92□□□□□ -0.5
NUP88-213ENST00000576862 MYSM1Q5VVJ2 828 aa11.92□□□□□ -0.5
NUP88-213ENST00000576862 ITGBL1O95965 494 aaPredicted RBP11.91□□□□□ -0.5
NUP88-213ENST00000576862 GUCA2AQ02747 115 aa11.91□□□□□ -0.5
NUP88-213ENST00000576862 SLC27A5Q9Y2P5 690 aa11.91□□□□□ -0.5
NUP88-213ENST00000576862 DIXDC1Q155Q3 683 aa11.9□□□□□ -0.5
NUP88-213ENST00000576862 GRIPAP1Q4V328 841 aa11.9□□□□□ -0.5
NUP88-213ENST00000576862 ZNF516Q92618 1163 aa11.9□□□□□ -0.5
NUP88-213ENST00000576862 IL21Q9HBE4 155 aa11.9□□□□□ -0.5
NUP88-213ENST00000576862 SCUBE3Q8IX30 993 aa11.89□□□□□ -0.51
NUP88-213ENST00000576862 RSBN1LQ6PCB5 846 aaPredicted RBP11.88□□□□□ -0.51
NUP88-213ENST00000576862 PCDHGC3Q9UN70 934 aa11.88□□□□□ -0.51
NUP88-213ENST00000576862 SPTLC1O15269 473 aa11.87□□□□□ -0.51
NUP88-213ENST00000576862 ZPR1O75312 459 aa11.87□□□□□ -0.51
NUP88-213ENST00000576862 NR1I2O75469 434 aa11.87□□□□□ -0.51
NUP88-213ENST00000576862 SH3D19Q5HYK7 790 aa11.87□□□□□ -0.51
NUP88-213ENST00000576862 RIC3Q7Z5B4 369 aa11.87□□□□□ -0.51
NUP88-213ENST00000576862 RSPH6AQ9H0K4 717 aa11.87□□□□□ -0.51
NUP88-213ENST00000576862 LIMD1Q9UGP4 676 aa11.87□□□□□ -0.51
NUP88-213ENST00000576862 FDX1P10109 184 aa11.86□□□□□ -0.51
NUP88-213ENST00000576862 GJA5P36382 358 aa11.86□□□□□ -0.51
NUP88-213ENST00000576862 THAP11Q96EK4 314 aa11.86□□□□□ -0.51
NUP88-213ENST00000576862 POLR3EQ9NVU0 708 aa11.85□□□□□ -0.51
NUP88-213ENST00000576862 PCDHB15Q9Y5E8 787 aa11.85□□□□□ -0.51
NUP88-213ENST00000576862 TLL1O43897 1013 aa11.84□□□□□ -0.51
NUP88-213ENST00000576862 KCNC4Q03721 635 aa11.84□□□□□ -0.51
NUP88-213ENST00000576862 SKIV2LQ15477 1246 aaKnown RBP11.84□□□□□ -0.51
NUP88-213ENST00000576862 CLK2P49760 499 aaKnown RBP11.83□□□□□ -0.52
NUP88-213ENST00000576862 BRICD5Q6PL45 260 aa11.83□□□□□ -0.52
NUP88-213ENST00000576862 RNF19BQ6ZMZ0 732 aa11.83□□□□□ -0.52
NUP88-213ENST00000576862 NKX2-3Q8TAU0 364 aa11.83□□□□□ -0.52
NUP88-213ENST00000576862 GOPCQ9HD26 462 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms