RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 SLC26A8Q96RN1 970 aa23.03■■□□□ 1.28
CLN3-236ENST00000568558 KCNA6P17658 529 aa23.02■■□□□ 1.28
CLN3-236ENST00000568558 CHD2O14647 1828 aaKnown RBP23.02■■□□□ 1.28
CLN3-236ENST00000568558 NKTRP30414 1462 aaKnown RBP23.02■■□□□ 1.28
CLN3-236ENST00000568558 TMEM94Q12767 1356 aa23.01■■□□□ 1.27
CLN3-236ENST00000568558 SENP3Q9H4L4 574 aaPredicted RBP23.01■■□□□ 1.27
CLN3-236ENST00000568558 RIMS2Q9UQ26 1411 aa22.98■■□□□ 1.27
CLN3-236ENST00000568558 ROBO1Q9Y6N7 1651 aa22.97■■□□□ 1.27
CLN3-236ENST00000568558 PLEKHG1Q9ULL1 1385 aa22.97■■□□□ 1.27
CLN3-236ENST00000568558 FAM135BQ49AJ0 1406 aa22.96■■□□□ 1.27
CLN3-236ENST00000568558 PROSER2Q86WR7 435 aaPredicted RBP22.95■■□□□ 1.26
CLN3-236ENST00000568558 BCANQ96GW7 911 aa22.94■■□□□ 1.26
CLN3-236ENST00000568558 PHF23Q9BUL5 403 aaPredicted RBP22.94■■□□□ 1.26
CLN3-236ENST00000568558 SPHKAPQ2M3C7 1700 aa22.91■■□□□ 1.26
CLN3-236ENST00000568558 PPP1R15AO75807 674 aaPredicted RBP22.91■■□□□ 1.26
CLN3-236ENST00000568558 HDGFP51858 240 aaKnown RBP22.91■■□□□ 1.26
CLN3-236ENST00000568558 RBM33Q96EV2 1170 aaKnown RBP22.91■■□□□ 1.26
CLN3-236ENST00000568558 DIP2AQ14689 1571 aa22.9■■□□□ 1.26
CLN3-236ENST00000568558 NUP155O75694 1391 aa22.89■■□□□ 1.26
CLN3-236ENST00000568558 ITGAEP38570 1179 aa22.89■■□□□ 1.25
CLN3-236ENST00000568558 CHGAP10645 457 aaKnown RBP22.88■■□□□ 1.25
CLN3-236ENST00000568558 MSH6P52701 1360 aa22.88■■□□□ 1.25
CLN3-236ENST00000568558 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.87■■□□□ 1.25
CLN3-236ENST00000568558 ADAMTS13Q76LX8 1427 aa22.87■■□□□ 1.25
CLN3-236ENST00000568558 PPARGC1BQ86YN6 1023 aaKnown RBP22.86■■□□□ 1.25
CLN3-236ENST00000568558 TBX22Q9Y458 520 aa22.86■■□□□ 1.25
CLN3-236ENST00000568558 PHLPP1O60346 1717 aa22.85■■□□□ 1.25
CLN3-236ENST00000568558 NUTM2DQ5VT03 806 aaPredicted RBP22.82■■□□□ 1.24
CLN3-236ENST00000568558 TRPM2O94759 1503 aa22.82■■□□□ 1.24
CLN3-236ENST00000568558 PIK3R4Q99570 1358 aa22.81■■□□□ 1.24
CLN3-236ENST00000568558 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.81■■□□□ 1.24
CLN3-236ENST00000568558 NRXN3Q9Y4C0 1643 aa22.81■■□□□ 1.24
CLN3-236ENST00000568558 NCOA3Q9Y6Q9 1424 aa22.81■■□□□ 1.24
CLN3-236ENST00000568558 SLAIN2Q9P270 581 aa22.78■■□□□ 1.24
CLN3-236ENST00000568558 RRBP1Q9P2E9 1410 aaKnown RBP22.78■■□□□ 1.24
CLN3-236ENST00000568558 RGS17Q9UGC6 210 aaPredicted RBP22.78■■□□□ 1.24
CLN3-236ENST00000568558 SETBP1Q9Y6X0 1596 aa22.76■■□□□ 1.23
CLN3-236ENST00000568558 CLTCL1P53675 1640 aa22.76■■□□□ 1.23
CLN3-236ENST00000568558 COL16A1Q07092 1604 aaPredicted RBP22.76■■□□□ 1.23
CLN3-236ENST00000568558 XRN1Q8IZH2 1706 aaKnown RBP22.76■■□□□ 1.23
CLN3-236ENST00000568558 KIF1BO60333 1816 aa22.75■■□□□ 1.23
CLN3-236ENST00000568558 PTPRUQ92729 1446 aa22.74■■□□□ 1.23
CLN3-236ENST00000568558 NAIPQ13075 1403 aa22.72■■□□□ 1.23
CLN3-236ENST00000568558 C14orf37Q86TY3 774 aa22.71■■□□□ 1.23
CLN3-236ENST00000568558 NEXMIFQ5QGS0 1516 aa22.7■■□□□ 1.22
CLN3-236ENST00000568558 AHDC1Q5TGY3 1603 aaPredicted RBP22.7■■□□□ 1.22
CLN3-236ENST00000568558 JCADQ9P266 1359 aa22.69■■□□□ 1.22
CLN3-236ENST00000568558 AMOTL2Q9Y2J4 779 aa22.69■■□□□ 1.22
CLN3-236ENST00000568558 CADPS2Q86UW7 1296 aa22.68■■□□□ 1.22
CLN3-236ENST00000568558 C19orf44Q9H6X5 657 aa22.68■■□□□ 1.22
CLN3-236ENST00000568558 SHPRHQ149N8 1683 aa22.67■■□□□ 1.22
CLN3-236ENST00000568558 ZNF326Q5BKZ1 582 aaKnown RBP22.66■■□□□ 1.22
CLN3-236ENST00000568558 ATF3P18847 181 aa22.65■■□□□ 1.22
CLN3-236ENST00000568558 DCCP43146 1447 aa22.65■■□□□ 1.22
CLN3-236ENST00000568558 POTEAQ6S8J7 498 aa22.64■■□□□ 1.21
CLN3-236ENST00000568558 SETD1AO15047 1707 aaKnown RBP22.63■■□□□ 1.21
CLN3-236ENST00000568558 NALCNQ8IZF0 1738 aa22.62■■□□□ 1.21
CLN3-236ENST00000568558 HFM1A2PYH4 1435 aa22.62■■□□□ 1.21
CLN3-236ENST00000568558 METP08581 1390 aa22.62■■□□□ 1.21
CLN3-236ENST00000568558 NHSL1Q5SYE7 1610 aa22.6■■□□□ 1.21
CLN3-236ENST00000568558 LRP6O75581 1613 aa22.6■■□□□ 1.21
CLN3-236ENST00000568558 ASXL1Q8IXJ9 1541 aa22.58■■□□□ 1.21
CLN3-236ENST00000568558 PPLO60437 1756 aa22.58■■□□□ 1.2
CLN3-236ENST00000568558 SPATA31A6Q5VVP1 1343 aa22.57■■□□□ 1.2
CLN3-236ENST00000568558 MST1RQ04912 1400 aa22.57■■□□□ 1.2
CLN3-236ENST00000568558 BRINP3Q76B58 766 aa22.57■■□□□ 1.2
CLN3-236ENST00000568558 ADGRL3Q9HAR2 1447 aa22.56■■□□□ 1.2
CLN3-236ENST00000568558 TRIM52Q96A61 297 aa22.54■■□□□ 1.2
CLN3-236ENST00000568558 PTCH1Q13635 1447 aa22.5■■□□□ 1.19
CLN3-236ENST00000568558 SLC4A1APQ9BWU0 796 aaKnown RBP22.5■■□□□ 1.19
CLN3-236ENST00000568558 SETD5Q9C0A6 1442 aa22.49■■□□□ 1.19
CLN3-236ENST00000568558 VGFO15240 615 aaPredicted RBP22.48■■□□□ 1.19
CLN3-236ENST00000568558 MEX3CQ5U5Q3 659 aaKnown RBP22.48■■□□□ 1.19
CLN3-236ENST00000568558 PRAG1Q86YV5 1406 aa22.48■■□□□ 1.19
CLN3-236ENST00000568558 RPGRIP1LQ68CZ1 1315 aa22.47■■□□□ 1.19
CLN3-236ENST00000568558 LAMC1P11047 1609 aa22.46■■□□□ 1.19
CLN3-236ENST00000568558 IFT172Q9UG01 1749 aa22.46■■□□□ 1.19
CLN3-236ENST00000568558 ROBO2Q9HCK4 1378 aa22.44■■□□□ 1.18
CLN3-236ENST00000568558 ZNF772Q68DY9 489 aaPredicted RBP22.43■■□□□ 1.18
CLN3-236ENST00000568558 C1orf167Q5SNV9 1468 aa22.42■■□□□ 1.18
CLN3-236ENST00000568558 NUTM2BA6NNL0 878 aaPredicted RBP22.4■■□□□ 1.18
CLN3-236ENST00000568558 NUTM2EB1AL46 878 aaPredicted RBP22.4■■□□□ 1.18
CLN3-236ENST00000568558 NUTM2AQ8IVF1 878 aaPredicted RBP22.4■■□□□ 1.18
CLN3-236ENST00000568558 DDX17Q92841 729 aaKnown RBP22.4■■□□□ 1.18
CLN3-236ENST00000568558 LRRC59Q96AG4 307 aaKnown RBP22.4■■□□□ 1.18
CLN3-236ENST00000568558 FOXD1Q16676 465 aa22.39■■□□□ 1.17
CLN3-236ENST00000568558 CCDC144AA2RUR9 1427 aa22.39■■□□□ 1.17
CLN3-236ENST00000568558 PNPLA6Q8IY17 1366 aa22.38■■□□□ 1.17
CLN3-236ENST00000568558 SPATA31E1Q6ZUB1 1445 aa22.37■■□□□ 1.17
CLN3-236ENST00000568558 CDC42BPGQ6DT37 1551 aa22.37■■□□□ 1.17
CLN3-236ENST00000568558 KNDC1Q76NI1 1749 aa22.36■■□□□ 1.17
CLN3-236ENST00000568558 AFF2P51816 1311 aa22.34■■□□□ 1.17
CLN3-236ENST00000568558 MPHOSPH9Q99550 1183 aa22.33■■□□□ 1.17
CLN3-236ENST00000568558 CDK12Q9NYV4 1490 aaPredicted RBP22.33■■□□□ 1.16
CLN3-236ENST00000568558 ADGRF5Q8IZF2 1346 aa22.32■■□□□ 1.16
CLN3-236ENST00000568558 ORAI2Q96SN7 254 aa22.32■■□□□ 1.16
CLN3-236ENST00000568558 ANKRD30BQ9BXX2 1392 aa22.31■■□□□ 1.16
CLN3-236ENST00000568558 RXRBP28702 533 aa22.31■■□□□ 1.16
CLN3-236ENST00000568558 COL22A1Q8NFW1 1626 aaPredicted RBP22.31■■□□□ 1.16
CLN3-236ENST00000568558 TECPR2O15040 1411 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms