RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 XIRP1Q702N8 1843 aaKnown RBP28.6■■■□□ 2.17
CLN3-218ENST00000565688 TMEM131LA2VDJ0 1609 aa28.6■■■□□ 2.17
CLN3-218ENST00000565688 E9PCH4 1651 aa28.6■■■□□ 2.17
CLN3-218ENST00000565688 NUP155O75694 1391 aa28.6■■■□□ 2.17
CLN3-218ENST00000565688 RIMS2Q9UQ26 1411 aa28.59■■■□□ 2.17
CLN3-218ENST00000565688 MED1Q15648 1581 aaPredicted RBP28.58■■■□□ 2.17
CLN3-218ENST00000565688 PPP1R15AO75807 674 aaPredicted RBP28.58■■■□□ 2.17
CLN3-218ENST00000565688 TMEM94Q12767 1356 aa28.58■■■□□ 2.17
CLN3-218ENST00000565688 PLEKHG1Q9ULL1 1385 aa28.58■■■□□ 2.17
CLN3-218ENST00000565688 NKTRP30414 1462 aaKnown RBP28.57■■■□□ 2.16
CLN3-218ENST00000565688 PROSER2Q86WR7 435 aaPredicted RBP28.56■■■□□ 2.16
CLN3-218ENST00000565688 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.56■■■□□ 2.16
CLN3-218ENST00000565688 MYO5BQ9ULV0 1848 aa28.55■■■□□ 2.16
CLN3-218ENST00000565688 NWD1Q149M9 1564 aa28.55■■■□□ 2.16
CLN3-218ENST00000565688 CHGAP10645 457 aaKnown RBP28.54■■■□□ 2.16
CLN3-218ENST00000565688 SENP3Q9H4L4 574 aaPredicted RBP28.5■■■□□ 2.15
CLN3-218ENST00000565688 FAM135BQ49AJ0 1406 aa28.5■■■□□ 2.15
CLN3-218ENST00000565688 TBX22Q9Y458 520 aa28.48■■■□□ 2.15
CLN3-218ENST00000565688 RRBP1Q9P2E9 1410 aaKnown RBP28.48■■■□□ 2.15
CLN3-218ENST00000565688 CHD2O14647 1828 aaKnown RBP28.44■■■□□ 2.14
CLN3-218ENST00000565688 RBM33Q96EV2 1170 aaKnown RBP28.44■■■□□ 2.14
CLN3-218ENST00000565688 PHF23Q9BUL5 403 aaPredicted RBP28.44■■■□□ 2.14
CLN3-218ENST00000565688 MSH6P52701 1360 aa28.44■■■□□ 2.14
CLN3-218ENST00000565688 DIP2AQ14689 1571 aa28.42■■■□□ 2.14
CLN3-218ENST00000565688 PIK3R4Q99570 1358 aa28.4■■■□□ 2.14
CLN3-218ENST00000565688 NUTM2DQ5VT03 806 aaPredicted RBP28.4■■■□□ 2.14
CLN3-218ENST00000565688 ADAMTS13Q76LX8 1427 aa28.4■■■□□ 2.14
CLN3-218ENST00000565688 SPHKAPQ2M3C7 1700 aa28.38■■■□□ 2.13
CLN3-218ENST00000565688 NCOA3Q9Y6Q9 1424 aa28.38■■■□□ 2.13
CLN3-218ENST00000565688 ROBO1Q9Y6N7 1651 aa28.37■■■□□ 2.13
CLN3-218ENST00000565688 NAIPQ13075 1403 aa28.35■■■□□ 2.13
CLN3-218ENST00000565688 SLAIN2Q9P270 581 aa28.35■■■□□ 2.13
CLN3-218ENST00000565688 TRPM2O94759 1503 aa28.33■■■□□ 2.13
CLN3-218ENST00000565688 ZNF326Q5BKZ1 582 aaKnown RBP28.3■■■□□ 2.12
CLN3-218ENST00000565688 C14orf37Q86TY3 774 aa28.3■■■□□ 2.12
CLN3-218ENST00000565688 HFM1A2PYH4 1435 aa28.27■■■□□ 2.12
CLN3-218ENST00000565688 SETBP1Q9Y6X0 1596 aa28.27■■■□□ 2.12
CLN3-218ENST00000565688 C19orf44Q9H6X5 657 aa28.26■■■□□ 2.11
CLN3-218ENST00000565688 AMOTL2Q9Y2J4 779 aa28.26■■■□□ 2.11
CLN3-218ENST00000565688 CADPS2Q86UW7 1296 aa28.25■■■□□ 2.11
CLN3-218ENST00000565688 CLTCL1P53675 1640 aa28.24■■■□□ 2.11
CLN3-218ENST00000565688 ATF3P18847 181 aa28.23■■■□□ 2.11
CLN3-218ENST00000565688 NRXN3Q9Y4C0 1643 aa28.22■■■□□ 2.11
CLN3-218ENST00000565688 PTPRUQ92729 1446 aa28.22■■■□□ 2.11
CLN3-218ENST00000565688 TRIM52Q96A61 297 aa28.22■■■□□ 2.11
CLN3-218ENST00000565688 PHLPP1O60346 1717 aa28.2■■■□□ 2.1
CLN3-218ENST00000565688 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.2■■■□□ 2.1
CLN3-218ENST00000565688 KIF1BO60333 1816 aa28.18■■■□□ 2.1
CLN3-218ENST00000565688 NEXMIFQ5QGS0 1516 aa28.18■■■□□ 2.1
CLN3-218ENST00000565688 RGS17Q9UGC6 210 aaPredicted RBP28.17■■■□□ 2.1
CLN3-218ENST00000565688 XRN1Q8IZH2 1706 aaKnown RBP28.17■■■□□ 2.1
CLN3-218ENST00000565688 JCADQ9P266 1359 aa28.16■■■□□ 2.1
CLN3-218ENST00000565688 SLC4A1APQ9BWU0 796 aaKnown RBP28.16■■■□□ 2.1
CLN3-218ENST00000565688 DCCP43146 1447 aa28.15■■■□□ 2.1
CLN3-218ENST00000565688 METP08581 1390 aa28.14■■■□□ 2.1
CLN3-218ENST00000565688 COL16A1Q07092 1604 aaPredicted RBP28.11■■■□□ 2.09
CLN3-218ENST00000565688 VGFO15240 615 aaPredicted RBP28.11■■■□□ 2.09
CLN3-218ENST00000565688 AHDC1Q5TGY3 1603 aaPredicted RBP28.09■■■□□ 2.09
CLN3-218ENST00000565688 RPGRIP1LQ68CZ1 1315 aa28.09■■■□□ 2.09
CLN3-218ENST00000565688 SPATA31A6Q5VVP1 1343 aa28.05■■■□□ 2.08
CLN3-218ENST00000565688 BRINP3Q76B58 766 aa28.05■■■□□ 2.08
CLN3-218ENST00000565688 ADGRL3Q9HAR2 1447 aa28.03■■■□□ 2.08
CLN3-218ENST00000565688 MST1RQ04912 1400 aa28.01■■■□□ 2.08
CLN3-218ENST00000565688 POTEAQ6S8J7 498 aa28.01■■■□□ 2.07
CLN3-218ENST00000565688 ASXL1Q8IXJ9 1541 aa27.99■■■□□ 2.07
CLN3-218ENST00000565688 PTCH1Q13635 1447 aa27.99■■■□□ 2.07
CLN3-218ENST00000565688 SHPRHQ149N8 1683 aa27.97■■■□□ 2.07
CLN3-218ENST00000565688 PPLO60437 1756 aa27.96■■■□□ 2.07
CLN3-218ENST00000565688 ACIN1Q9UKV3 1341 aaKnown RBP27.96■■■□□ 2.07
CLN3-218ENST00000565688 SETD1AO15047 1707 aaKnown RBP27.96■■■□□ 2.07
CLN3-218ENST00000565688 CCDC144AA2RUR9 1427 aa27.96■■■□□ 2.07
CLN3-218ENST00000565688 FOXD1Q16676 465 aa27.96■■■□□ 2.07
CLN3-218ENST00000565688 PRAG1Q86YV5 1406 aa27.95■■■□□ 2.07
CLN3-218ENST00000565688 NALCNQ8IZF0 1738 aa27.95■■■□□ 2.06
CLN3-218ENST00000565688 MEX3CQ5U5Q3 659 aaKnown RBP27.94■■■□□ 2.06
CLN3-218ENST00000565688 MPHOSPH9Q99550 1183 aa27.94■■■□□ 2.06
CLN3-218ENST00000565688 LRP6O75581 1613 aa27.93■■■□□ 2.06
CLN3-218ENST00000565688 SETD5Q9C0A6 1442 aa27.92■■■□□ 2.06
CLN3-218ENST00000565688 ROBO2Q9HCK4 1378 aa27.91■■■□□ 2.06
CLN3-218ENST00000565688 NHSL1Q5SYE7 1610 aa27.91■■■□□ 2.06
CLN3-218ENST00000565688 LRRC59Q96AG4 307 aaKnown RBP27.89■■■□□ 2.06
CLN3-218ENST00000565688 ZNF772Q68DY9 489 aaPredicted RBP27.88■■■□□ 2.05
CLN3-218ENST00000565688 SPATA31E1Q6ZUB1 1445 aa27.88■■■□□ 2.05
CLN3-218ENST00000565688 ANKRD30BQ9BXX2 1392 aa27.87■■■□□ 2.05
CLN3-218ENST00000565688 C1orf167Q5SNV9 1468 aa27.87■■■□□ 2.05
CLN3-218ENST00000565688 RGL3Q3MIN7 710 aa27.86■■■□□ 2.05
CLN3-218ENST00000565688 ADGRF5Q8IZF2 1346 aa27.84■■■□□ 2.05
CLN3-218ENST00000565688 NUTM2BA6NNL0 878 aaPredicted RBP27.83■■■□□ 2.05
CLN3-218ENST00000565688 NUTM2EB1AL46 878 aaPredicted RBP27.83■■■□□ 2.05
CLN3-218ENST00000565688 NUTM2AQ8IVF1 878 aaPredicted RBP27.83■■■□□ 2.05
CLN3-218ENST00000565688 DDX17Q92841 729 aaKnown RBP27.8■■■□□ 2.04
CLN3-218ENST00000565688 IFT172Q9UG01 1749 aa27.79■■■□□ 2.04
CLN3-218ENST00000565688 LAMC1P11047 1609 aa27.78■■■□□ 2.04
CLN3-218ENST00000565688 PNPLA6Q8IY17 1366 aa27.77■■■□□ 2.04
CLN3-218ENST00000565688 TECPR2O15040 1411 aa27.76■■■□□ 2.04
CLN3-218ENST00000565688 ORAI2Q96SN7 254 aa27.76■■■□□ 2.03
CLN3-218ENST00000565688 LRPPRCP42704 1394 aaKnown RBP27.75■■■□□ 2.03
CLN3-218ENST00000565688 PIK3C2GO75747 1445 aa27.75■■■□□ 2.03
CLN3-218ENST00000565688 CDC42BPGQ6DT37 1551 aa27.74■■■□□ 2.03
CLN3-218ENST00000565688 SOS2Q07890 1332 aaPredicted RBP27.74■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms