RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 POTEEQ6S8J3 1075 aa7.99□□□□□ -1.13
VPS35P1-201ENST00000563400 PROSER2Q86WR7 435 aaPredicted RBP7.99□□□□□ -1.13
VPS35P1-201ENST00000563400 MMRN1Q13201 1228 aa7.98□□□□□ -1.13
VPS35P1-201ENST00000563400 ADGRD1Q6QNK2 874 aa7.98□□□□□ -1.13
VPS35P1-201ENST00000563400 POM121Q96HA1 1249 aa7.98□□□□□ -1.13
VPS35P1-201ENST00000563400 GRXCR2A6NFK2 248 aa7.98□□□□□ -1.13
VPS35P1-201ENST00000563400 MCM6Q14566 821 aa7.98□□□□□ -1.13
VPS35P1-201ENST00000563400 FNBP4Q8N3X1 1017 aaPredicted RBP7.98□□□□□ -1.13
VPS35P1-201ENST00000563400 MYT1LQ9UL68 1186 aa7.98□□□□□ -1.13
VPS35P1-201ENST00000563400 PPP1R3GB7ZBB8 358 aa7.97□□□□□ -1.13
VPS35P1-201ENST00000563400 MAP3K7O43318 606 aa7.97□□□□□ -1.13
VPS35P1-201ENST00000563400 SLC4A5Q9BY07 1137 aa7.97□□□□□ -1.13
VPS35P1-201ENST00000563400 DMRTA1Q5VZB9 504 aa7.96□□□□□ -1.14
VPS35P1-201ENST00000563400 RBM33Q96EV2 1170 aaKnown RBP7.96□□□□□ -1.14
VPS35P1-201ENST00000563400 C6orf132Q5T0Z8 1188 aa7.95□□□□□ -1.14
VPS35P1-201ENST00000563400 EN1Q05925 392 aaPredicted RBP7.94□□□□□ -1.14
VPS35P1-201ENST00000563400 RNF166Q96A37 237 aaPredicted RBP7.94□□□□□ -1.14
VPS35P1-201ENST00000563400 FAM177A1Q8N128 213 aaPredicted RBP7.93□□□□□ -1.14
VPS35P1-201ENST00000563400 CERKQ8TCT0 537 aa7.93□□□□□ -1.14
VPS35P1-201ENST00000563400 NBPF3Q9H094 633 aa7.93□□□□□ -1.14
VPS35P1-201ENST00000563400 VPS9D1Q9Y2B5 631 aa7.93□□□□□ -1.14
VPS35P1-201ENST00000563400 PARP9Q8IXQ6 854 aa7.93□□□□□ -1.14
VPS35P1-201ENST00000563400 ZBED2Q9BTP6 218 aa7.93□□□□□ -1.14
VPS35P1-201ENST00000563400 GOPCQ9HD26 462 aa7.92□□□□□ -1.14
VPS35P1-201ENST00000563400 GOLGA8CPA6NN73 597 aa7.91□□□□□ -1.14
VPS35P1-201ENST00000563400 HRO43593 1189 aa7.89□□□□□ -1.15
VPS35P1-201ENST00000563400 OSBPP22059 807 aa7.89□□□□□ -1.15
VPS35P1-201ENST00000563400 RSPH4AQ5TD94 716 aa7.89□□□□□ -1.15
VPS35P1-201ENST00000563400 MRPL50Q8N5N7 158 aaKnown RBP7.89□□□□□ -1.15
VPS35P1-201ENST00000563400 RABGEF1Q9UJ41 708 aa7.89□□□□□ -1.15
VPS35P1-201ENST00000563400 COL9A1P20849 921 aa7.88□□□□□ -1.15
VPS35P1-201ENST00000563400 GPR37O15354 613 aa7.88□□□□□ -1.15
VPS35P1-201ENST00000563400 TSR1Q2NL82 804 aaKnown RBP7.88□□□□□ -1.15
VPS35P1-201ENST00000563400 PCMTD1Q96MG8 357 aaPredicted RBP7.88□□□□□ -1.15
VPS35P1-201ENST00000563400 PACS2Q86VP3 889 aa7.87□□□□□ -1.15
VPS35P1-201ENST00000563400 CCDC102AQ96A19 550 aa7.87□□□□□ -1.15
VPS35P1-201ENST00000563400 TRIM6-TRIM34B2RNG4 842 aa7.86□□□□□ -1.15
VPS35P1-201ENST00000563400 AMHR2Q16671 573 aa7.86□□□□□ -1.15
VPS35P1-201ENST00000563400 PROX2Q3B8N5 592 aa7.86□□□□□ -1.15
VPS35P1-201ENST00000563400 DHX37Q8IY37 1157 aaKnown RBP7.86□□□□□ -1.15
VPS35P1-201ENST00000563400 BHMG1C9JSJ3 638 aaPredicted RBP7.85□□□□□ -1.15
VPS35P1-201ENST00000563400 AMOTL2Q9Y2J4 779 aa7.85□□□□□ -1.15
VPS35P1-201ENST00000563400 UNCXA6NJT0 531 aa7.84□□□□□ -1.15
VPS35P1-201ENST00000563400 PRSS12P56730 875 aa7.84□□□□□ -1.15
VPS35P1-201ENST00000563400 LAPTM4BQ86VI4 370 aa7.84□□□□□ -1.15
VPS35P1-201ENST00000563400 KIAA1468Q9P260 1216 aa7.84□□□□□ -1.15
VPS35P1-201ENST00000563400 SCRIBQ14160 1630 aa7.84□□□□□ -1.15
VPS35P1-201ENST00000563400 MINK1Q8N4C8 1332 aaPredicted RBP7.84□□□□□ -1.16
VPS35P1-201ENST00000563400 CDCA7LQ96GN5 454 aa7.83□□□□□ -1.16
VPS35P1-201ENST00000563400 RBM27Q9P2N5 1060 aaKnown RBP7.83□□□□□ -1.16
VPS35P1-201ENST00000563400 HCSTQ9UBK5 93 aa7.83□□□□□ -1.16
VPS35P1-201ENST00000563400 KCTD12Q96CX2 325 aaKnown RBP7.83□□□□□ -1.16
VPS35P1-201ENST00000563400 NUTM2FA1L443 756 aa7.82□□□□□ -1.16
VPS35P1-201ENST00000563400 IRF6O14896 467 aa7.82□□□□□ -1.16
VPS35P1-201ENST00000563400 WNT2BQ93097 391 aa7.82□□□□□ -1.16
VPS35P1-201ENST00000563400 COG6Q9Y2V7 657 aa7.82□□□□□ -1.16
VPS35P1-201ENST00000563400 ACIN1Q9UKV3 1341 aaKnown RBP7.81□□□□□ -1.16
VPS35P1-201ENST00000563400 NBPF26B4DH59 902 aa7.81□□□□□ -1.16
VPS35P1-201ENST00000563400 PPP1R15AO75807 674 aaPredicted RBP7.81□□□□□ -1.16
VPS35P1-201ENST00000563400 MS4A1P11836 297 aa7.81□□□□□ -1.16
VPS35P1-201ENST00000563400 PRIM1P49642 420 aaKnown RBP7.81□□□□□ -1.16
VPS35P1-201ENST00000563400 CCDC27Q2M243 656 aa7.81□□□□□ -1.16
VPS35P1-201ENST00000563400 ANKK1Q8NFD2 765 aa7.81□□□□□ -1.16
VPS35P1-201ENST00000563400 POLR3GLQ9BT43 218 aa7.81□□□□□ -1.16
VPS35P1-201ENST00000563400 ZNF330Q9Y3S2 320 aaPredicted RBP7.81□□□□□ -1.16
VPS35P1-201ENST00000563400 KCNA1Q09470 495 aa7.8□□□□□ -1.16
VPS35P1-201ENST00000563400 MAP2K5Q13163 448 aa7.8□□□□□ -1.16
VPS35P1-201ENST00000563400 FAM98CQ17RN3 349 aaKnown RBP7.8□□□□□ -1.16
VPS35P1-201ENST00000563400 CDHR5Q9HBB8 845 aa7.8□□□□□ -1.16
VPS35P1-201ENST00000563400 CARNS1A5YM72 827 aa7.79□□□□□ -1.16
VPS35P1-201ENST00000563400 PATL2C9JE40 543 aaKnown RBP7.78□□□□□ -1.16
VPS35P1-201ENST00000563400 FCHSD2O94868 740 aa7.78□□□□□ -1.16
VPS35P1-201ENST00000563400 BRD1O95696 1058 aa7.78□□□□□ -1.16
VPS35P1-201ENST00000563400 HDGFP51858 240 aaKnown RBP7.78□□□□□ -1.16
VPS35P1-201ENST00000563400 TTLL12Q14166 644 aaPredicted RBP7.78□□□□□ -1.16
VPS35P1-201ENST00000563400 IGSF5Q9NSI5 407 aa7.78□□□□□ -1.16
VPS35P1-201ENST00000563400 TSKSQ9UJT2 592 aa7.78□□□□□ -1.16
VPS35P1-201ENST00000563400 SEPT9Q9UHD8 586 aaPredicted RBP7.78□□□□□ -1.16
VPS35P1-201ENST00000563400 PPM1GO15355 546 aaPredicted RBP7.77□□□□□ -1.17
VPS35P1-201ENST00000563400 PTGDRQ13258 359 aa7.77□□□□□ -1.17
VPS35P1-201ENST00000563400 ZFRQ96KR1 1074 aaKnown RBP7.77□□□□□ -1.17
VPS35P1-201ENST00000563400 THSD4Q6ZMP0 1018 aa7.76□□□□□ -1.17
VPS35P1-201ENST00000563400 TATDN2Q93075 761 aa7.76□□□□□ -1.17
VPS35P1-201ENST00000563400 NPDC1Q9NQX5 325 aaPredicted RBP7.76□□□□□ -1.17
VPS35P1-201ENST00000563400 PNMA3Q9UL41 463 aa7.76□□□□□ -1.17
VPS35P1-201ENST00000563400 FECHP22830 423 aa7.75□□□□□ -1.17
VPS35P1-201ENST00000563400 SLC4A3P48751 1232 aa7.75□□□□□ -1.17
VPS35P1-201ENST00000563400 PTPN5P54829 565 aa7.75□□□□□ -1.17
VPS35P1-201ENST00000563400 PDE4CQ08493 712 aa7.75□□□□□ -1.17
VPS35P1-201ENST00000563400 SH3D19Q5HYK7 790 aa7.75□□□□□ -1.17
VPS35P1-201ENST00000563400 PADI6Q6TGC4 694 aa7.75□□□□□ -1.17
VPS35P1-201ENST00000563400 GIGYF2Q6Y7W6 1299 aaKnown RBP7.75□□□□□ -1.17
VPS35P1-201ENST00000563400 CCDC125Q86Z20 511 aa7.75□□□□□ -1.17
VPS35P1-201ENST00000563400 IVNS1ABPQ9Y6Y0 642 aa7.75□□□□□ -1.17
VPS35P1-201ENST00000563400 PROCA1Q8NCQ7 364 aaPredicted RBP7.74□□□□□ -1.17
VPS35P1-201ENST00000563400 LRCH3Q96II8 777 aa7.74□□□□□ -1.17
VPS35P1-201ENST00000563400 REPIN1Q9BWE0 567 aaKnown RBP7.74□□□□□ -1.17
VPS35P1-201ENST00000563400 UNC13AQ9UPW8 1703 aa7.74□□□□□ -1.17
VPS35P1-201ENST00000563400 BRD2P25440 801 aaKnown RBP7.73□□□□□ -1.17
VPS35P1-201ENST00000563400 HIC1Q14526 733 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms