RNA–Protein interactions for RNA: ENST00000539512.1

TRAV11-201, Transcript of T cell receptor alpha variable 11 (pseudogene), humanhuman

BASIC

Gene TRAV11, Length 339 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV11-201ENST00000539512 C3orf80F5H4A9 247 aa13.6□□□□□ -0.23
TRAV11-201ENST00000539512 ERICH6Q7L0X2 663 aa13.6□□□□□ -0.23
TRAV11-201ENST00000539512 FAM98CQ17RN3 349 aaKnown RBP13.59□□□□□ -0.23
TRAV11-201ENST00000539512 RDH13Q8NBN7 331 aa13.59□□□□□ -0.23
TRAV11-201ENST00000539512 PCMTD1Q96MG8 357 aaPredicted RBP13.59□□□□□ -0.23
TRAV11-201ENST00000539512 TK2O00142 265 aa13.58□□□□□ -0.24
TRAV11-201ENST00000539512 DIXDC1Q155Q3 683 aa13.58□□□□□ -0.24
TRAV11-201ENST00000539512 LSM11P83369 360 aaKnown RBP eCLIP13.57□□□□□ -0.24
TRAV11-201ENST00000539512 LAPTM4BQ86VI4 370 aa13.57□□□□□ -0.24
TRAV11-201ENST00000539512 MRPL50Q8N5N7 158 aaKnown RBP13.56□□□□□ -0.24
TRAV11-201ENST00000539512 GOPCQ9HD26 462 aa13.56□□□□□ -0.24
TRAV11-201ENST00000539512 POTEB3A0JP26 581 aa13.54□□□□□ -0.24
TRAV11-201ENST00000539512 POTEBQ6S5H4 581 aa13.54□□□□□ -0.24
TRAV11-201ENST00000539512 NUTM1Q86Y26 1132 aa13.54□□□□□ -0.24
TRAV11-201ENST00000539512 RNF40O75150 1001 aa13.53□□□□□ -0.24
TRAV11-201ENST00000539512 SH3D19Q5HYK7 790 aa13.53□□□□□ -0.24
TRAV11-201ENST00000539512 SWT1Q5T5J6 900 aaKnown RBP13.53□□□□□ -0.24
TRAV11-201ENST00000539512 ADGRD1Q6QNK2 874 aa13.53□□□□□ -0.24
TRAV11-201ENST00000539512 ANKRD13DQ6ZTN6 518 aa13.53□□□□□ -0.24
TRAV11-201ENST00000539512 GOLGA8CPA6NN73 597 aa13.52□□□□□ -0.25
TRAV11-201ENST00000539512 LCE2DQ5TA82 110 aaPredicted RBP13.52□□□□□ -0.25
TRAV11-201ENST00000539512 SLF2Q8IX21 1173 aa13.52□□□□□ -0.25
TRAV11-201ENST00000539512 CD46P15529 392 aa13.51□□□□□ -0.25
TRAV11-201ENST00000539512 TBC1D2Q9BYX2 928 aa13.5□□□□□ -0.25
TRAV11-201ENST00000539512 SKIV2LQ15477 1246 aaKnown RBP13.49□□□□□ -0.25
TRAV11-201ENST00000539512 C14orf37Q86TY3 774 aa13.48□□□□□ -0.25
TRAV11-201ENST00000539512 SAMD7Q7Z3H4 446 aa13.47□□□□□ -0.25
TRAV11-201ENST00000539512 NECTIN2Q92692 538 aa13.47□□□□□ -0.25
TRAV11-201ENST00000539512 POLR3EQ9NVU0 708 aa13.47□□□□□ -0.25
TRAV11-201ENST00000539512 ZFRQ96KR1 1074 aaKnown RBP13.46□□□□□ -0.25
TRAV11-201ENST00000539512 MYSM1Q5VVJ2 828 aa13.45□□□□□ -0.26
TRAV11-201ENST00000539512 LRCH3Q96II8 777 aa13.45□□□□□ -0.26
TRAV11-201ENST00000539512 BHMG1C9JSJ3 638 aaPredicted RBP13.44□□□□□ -0.26
TRAV11-201ENST00000539512 CLK2P49760 499 aaKnown RBP13.44□□□□□ -0.26
TRAV11-201ENST00000539512 KDM4AO75164 1064 aa13.43□□□□□ -0.26
TRAV11-201ENST00000539512 ANKK1Q8NFD2 765 aa13.43□□□□□ -0.26
TRAV11-201ENST00000539512 SPIRE2Q8WWL2 714 aa13.43□□□□□ -0.26
TRAV11-201ENST00000539512 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.42□□□□□ -0.26
TRAV11-201ENST00000539512 GCGRP47871 477 aa13.41□□□□□ -0.26
TRAV11-201ENST00000539512 USP46P62068 366 aa13.41□□□□□ -0.26
TRAV11-201ENST00000539512 KMT5BQ4FZB7 885 aa13.39□□□□□ -0.27
TRAV11-201ENST00000539512 GRIPAP1Q4V328 841 aa13.39□□□□□ -0.27
TRAV11-201ENST00000539512 RIC3Q7Z5B4 369 aa13.39□□□□□ -0.27
TRAV11-201ENST00000539512 CFHP08603 1231 aa13.38□□□□□ -0.27
TRAV11-201ENST00000539512 HRO43593 1189 aa13.37□□□□□ -0.27
TRAV11-201ENST00000539512 SLC10A3P09131 477 aa13.37□□□□□ -0.27
TRAV11-201ENST00000539512 TIMELESSQ9UNS1 1208 aa13.37□□□□□ -0.27
TRAV11-201ENST00000539512 PROCA1Q8NCQ7 364 aaPredicted RBP13.36□□□□□ -0.27
TRAV11-201ENST00000539512 PRR14Q9BWN1 585 aa13.36□□□□□ -0.27
TRAV11-201ENST00000539512 CSPP1Q1MSJ5 1256 aa13.35□□□□□ -0.27
TRAV11-201ENST00000539512 MOXD2PA6NHM9 499 aa13.34□□□□□ -0.27
TRAV11-201ENST00000539512 SPTLC1O15269 473 aa13.34□□□□□ -0.27
TRAV11-201ENST00000539512 WNT2BQ93097 391 aa13.34□□□□□ -0.27
TRAV11-201ENST00000539512 PPP4CP60510 307 aa13.33□□□□□ -0.28
TRAV11-201ENST00000539512 RSBN1LQ6PCB5 846 aaPredicted RBP13.33□□□□□ -0.28
TRAV11-201ENST00000539512 GJA5P36382 358 aa13.32□□□□□ -0.28
TRAV11-201ENST00000539512 FLIIQ13045 1269 aa13.32□□□□□ -0.28
TRAV11-201ENST00000539512 NUTM2BA6NNL0 878 aaPredicted RBP13.31□□□□□ -0.28
TRAV11-201ENST00000539512 NUTM2EB1AL46 878 aaPredicted RBP13.31□□□□□ -0.28
TRAV11-201ENST00000539512 HOXA2O43364 376 aa13.31□□□□□ -0.28
TRAV11-201ENST00000539512 NDUFV2P19404 249 aa13.31□□□□□ -0.28
TRAV11-201ENST00000539512 NUTM2DQ5VT03 806 aaPredicted RBP13.31□□□□□ -0.28
TRAV11-201ENST00000539512 NUTM2AQ8IVF1 878 aaPredicted RBP13.31□□□□□ -0.28
TRAV11-201ENST00000539512 LIMD1Q9UGP4 676 aa13.31□□□□□ -0.28
TRAV11-201ENST00000539512 SOWAHBA6NEL2 793 aa13.3□□□□□ -0.28
TRAV11-201ENST00000539512 FDX1P10109 184 aa13.3□□□□□ -0.28
TRAV11-201ENST00000539512 POTEGQ6S5H5 508 aa13.3□□□□□ -0.28
TRAV11-201ENST00000539512 HPS5Q9UPZ3 1129 aa13.3□□□□□ -0.28
TRAV11-201ENST00000539512 TUSC1Q2TAM9 212 aa13.29□□□□□ -0.28
TRAV11-201ENST00000539512 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.29□□□□□ -0.28
TRAV11-201ENST00000539512 ATP6V1AP38606 617 aa13.28□□□□□ -0.28
TRAV11-201ENST00000539512 BCAMP50895 628 aa13.28□□□□□ -0.28
TRAV11-201ENST00000539512 FUT2Q10981 343 aa13.28□□□□□ -0.28
TRAV11-201ENST00000539512 KRTAP3-3Q9BYR6 98 aa13.28□□□□□ -0.28
TRAV11-201ENST00000539512 KRTAP3-2Q9BYR7 98 aa13.28□□□□□ -0.28
TRAV11-201ENST00000539512 TSR3Q9UJK0 312 aaKnown RBP13.28□□□□□ -0.28
TRAV11-201ENST00000539512 POTEMA6NI47 508 aa13.27□□□□□ -0.29
TRAV11-201ENST00000539512 CDAN1Q8IWY9 1227 aa13.26□□□□□ -0.29
TRAV11-201ENST00000539512 ZBTB3Q9H5J0 574 aa13.26□□□□□ -0.29
TRAV11-201ENST00000539512 ACTN4O43707 911 aaKnown RBP13.24□□□□□ -0.29
TRAV11-201ENST00000539512 RFC5P40937 340 aa13.24□□□□□ -0.29
TRAV11-201ENST00000539512 PRPF38BQ5VTL8 546 aaKnown RBP13.24□□□□□ -0.29
TRAV11-201ENST00000539512 TMEM259Q4ZIN3 620 aa13.23□□□□□ -0.29
TRAV11-201ENST00000539512 C6orf229H3BNL8 230 aa13.22□□□□□ -0.29
TRAV11-201ENST00000539512 KCTD12Q96CX2 325 aaKnown RBP13.22□□□□□ -0.29
TRAV11-201ENST00000539512 PCDHB15Q9Y5E8 787 aa13.22□□□□□ -0.29
TRAV11-201ENST00000539512 GUCA2AQ02747 115 aa13.21□□□□□ -0.29
TRAV11-201ENST00000539512 MTMR2Q13614 643 aa13.2□□□□□ -0.3
TRAV11-201ENST00000539512 QPCTQ16769 361 aa13.2□□□□□ -0.3
TRAV11-201ENST00000539512 Q3C1V9 767 aa13.2□□□□□ -0.3
TRAV11-201ENST00000539512 PPP2R2DQ66LE6 453 aa13.2□□□□□ -0.3
TRAV11-201ENST00000539512 HLA-CQ95604 372 aa13.2□□□□□ -0.3
TRAV11-201ENST00000539512 LILRB3O75022 631 aa13.19□□□□□ -0.3
TRAV11-201ENST00000539512 CABLES1Q8TDN4 633 aa13.19□□□□□ -0.3
TRAV11-201ENST00000539512 PCDHB3Q9Y5E6 796 aa13.19□□□□□ -0.3
TRAV11-201ENST00000539512 SPDYE5A6NIY4 337 aa13.18□□□□□ -0.3
TRAV11-201ENST00000539512 HRCP23327 699 aa13.18□□□□□ -0.3
TRAV11-201ENST00000539512 PUS10Q3MIT2 529 aaKnown RBP13.18□□□□□ -0.3
TRAV11-201ENST00000539512 BANK1Q8NDB2 785 aa13.18□□□□□ -0.3
TRAV11-201ENST00000539512 TSC1Q92574 1164 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms