RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 UNC13BO14795 1591 aa21.06■□□□□ 0.96
SS18-204ENST00000539244 GCC2Q8IWJ2 1684 aa21.05■□□□□ 0.96
SS18-204ENST00000539244 MYO5BQ9ULV0 1848 aa21.04■□□□□ 0.96
SS18-204ENST00000539244 PROSER2Q86WR7 435 aaPredicted RBP21.04■□□□□ 0.96
SS18-204ENST00000539244 PLEKHG1Q9ULL1 1385 aa21.04■□□□□ 0.96
SS18-204ENST00000539244 TMEM131LA2VDJ0 1609 aa21.04■□□□□ 0.96
SS18-204ENST00000539244 ROBO1Q9Y6N7 1651 aa21.02■□□□□ 0.96
SS18-204ENST00000539244 RGS17Q9UGC6 210 aaPredicted RBP21.01■□□□□ 0.95
SS18-204ENST00000539244 RIMS2Q9UQ26 1411 aa21.01■□□□□ 0.95
SS18-204ENST00000539244 CHD2O14647 1828 aaKnown RBP21.01■□□□□ 0.95
SS18-204ENST00000539244 ROCK1Q13464 1354 aa21■□□□□ 0.95
SS18-204ENST00000539244 HDGFP51858 240 aaKnown RBP21■□□□□ 0.95
SS18-204ENST00000539244 MSH6P52701 1360 aa20.98■□□□□ 0.95
SS18-204ENST00000539244 RBM33Q96EV2 1170 aaKnown RBP20.98■□□□□ 0.95
SS18-204ENST00000539244 E9PCH4 1651 aa20.98■□□□□ 0.95
SS18-204ENST00000539244 IQGAP3Q86VI3 1631 aa20.97■□□□□ 0.95
SS18-204ENST00000539244 BCANQ96GW7 911 aa20.97■□□□□ 0.95
SS18-204ENST00000539244 TBX22Q9Y458 520 aa20.96■□□□□ 0.95
SS18-204ENST00000539244 NCOA3Q9Y6Q9 1424 aa20.95■□□□□ 0.95
SS18-204ENST00000539244 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.95■□□□□ 0.94
SS18-204ENST00000539244 PPP1R15AO75807 674 aaPredicted RBP20.94■□□□□ 0.94
SS18-204ENST00000539244 DIP2AQ14689 1571 aa20.93■□□□□ 0.94
SS18-204ENST00000539244 ADAMTS13Q76LX8 1427 aa20.93■□□□□ 0.94
SS18-204ENST00000539244 SLAIN2Q9P270 581 aa20.92■□□□□ 0.94
SS18-204ENST00000539244 PIK3R4Q99570 1358 aa20.91■□□□□ 0.94
SS18-204ENST00000539244 PHLPP1O60346 1717 aa20.9■□□□□ 0.94
SS18-204ENST00000539244 NUP155O75694 1391 aa20.87■□□□□ 0.93
SS18-204ENST00000539244 CHGAP10645 457 aaKnown RBP20.87■□□□□ 0.93
SS18-204ENST00000539244 JCADQ9P266 1359 aa20.86■□□□□ 0.93
SS18-204ENST00000539244 POTEAQ6S8J7 498 aa20.86■□□□□ 0.93
SS18-204ENST00000539244 COL16A1Q07092 1604 aaPredicted RBP20.86■□□□□ 0.93
SS18-204ENST00000539244 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.84■□□□□ 0.93
SS18-204ENST00000539244 TRPM2O94759 1503 aa20.84■□□□□ 0.93
SS18-204ENST00000539244 NUTM2DQ5VT03 806 aaPredicted RBP20.83■□□□□ 0.93
SS18-204ENST00000539244 CADPS2Q86UW7 1296 aa20.82■□□□□ 0.92
SS18-204ENST00000539244 C19orf44Q9H6X5 657 aa20.82■□□□□ 0.92
SS18-204ENST00000539244 AHDC1Q5TGY3 1603 aaPredicted RBP20.81■□□□□ 0.92
SS18-204ENST00000539244 SPHKAPQ2M3C7 1700 aa20.81■□□□□ 0.92
SS18-204ENST00000539244 PTPRUQ92729 1446 aa20.8■□□□□ 0.92
SS18-204ENST00000539244 SETBP1Q9Y6X0 1596 aa20.8■□□□□ 0.92
SS18-204ENST00000539244 NRXN3Q9Y4C0 1643 aa20.79■□□□□ 0.92
SS18-204ENST00000539244 C14orf37Q86TY3 774 aa20.79■□□□□ 0.92
SS18-204ENST00000539244 AMOTL2Q9Y2J4 779 aa20.78■□□□□ 0.92
SS18-204ENST00000539244 XRN1Q8IZH2 1706 aaKnown RBP20.78■□□□□ 0.92
SS18-204ENST00000539244 DCCP43146 1447 aa20.78■□□□□ 0.92
SS18-204ENST00000539244 ATF3P18847 181 aa20.77■□□□□ 0.92
SS18-204ENST00000539244 ITGAEP38570 1179 aa20.77■□□□□ 0.92
SS18-204ENST00000539244 SPATA31A6Q5VVP1 1343 aa20.77■□□□□ 0.91
SS18-204ENST00000539244 SHPRHQ149N8 1683 aa20.75■□□□□ 0.91
SS18-204ENST00000539244 LRP6O75581 1613 aa20.75■□□□□ 0.91
SS18-204ENST00000539244 BRINP3Q76B58 766 aa20.71■□□□□ 0.91
SS18-204ENST00000539244 CLTCL1P53675 1640 aa20.7■□□□□ 0.9
SS18-204ENST00000539244 RRBP1Q9P2E9 1410 aaKnown RBP20.7■□□□□ 0.9
SS18-204ENST00000539244 NEXMIFQ5QGS0 1516 aa20.69■□□□□ 0.9
SS18-204ENST00000539244 METP08581 1390 aa20.69■□□□□ 0.9
SS18-204ENST00000539244 MST1RQ04912 1400 aa20.69■□□□□ 0.9
SS18-204ENST00000539244 ASXL1Q8IXJ9 1541 aa20.68■□□□□ 0.9
SS18-204ENST00000539244 SETD1AO15047 1707 aaKnown RBP20.68■□□□□ 0.9
SS18-204ENST00000539244 ZNF326Q5BKZ1 582 aaKnown RBP20.67■□□□□ 0.9
SS18-204ENST00000539244 PPARGC1BQ86YN6 1023 aaKnown RBP20.67■□□□□ 0.9
SS18-204ENST00000539244 NHSL1Q5SYE7 1610 aa20.67■□□□□ 0.9
SS18-204ENST00000539244 ZNF772Q68DY9 489 aaPredicted RBP20.66■□□□□ 0.9
SS18-204ENST00000539244 NAIPQ13075 1403 aa20.66■□□□□ 0.9
SS18-204ENST00000539244 SETD5Q9C0A6 1442 aa20.66■□□□□ 0.9
SS18-204ENST00000539244 KIF1BO60333 1816 aa20.65■□□□□ 0.9
SS18-204ENST00000539244 ADGRL3Q9HAR2 1447 aa20.65■□□□□ 0.9
SS18-204ENST00000539244 MEX3CQ5U5Q3 659 aaKnown RBP20.63■□□□□ 0.89
SS18-204ENST00000539244 NALCNQ8IZF0 1738 aa20.62■□□□□ 0.89
SS18-204ENST00000539244 PTCH1Q13635 1447 aa20.59■□□□□ 0.89
SS18-204ENST00000539244 PRAG1Q86YV5 1406 aa20.59■□□□□ 0.89
SS18-204ENST00000539244 LRRC59Q96AG4 307 aaKnown RBP20.58■□□□□ 0.89
SS18-204ENST00000539244 HFM1A2PYH4 1435 aa20.58■□□□□ 0.88
SS18-204ENST00000539244 CDK12Q9NYV4 1490 aaPredicted RBP20.56■□□□□ 0.88
SS18-204ENST00000539244 VGFO15240 615 aaPredicted RBP20.56■□□□□ 0.88
SS18-204ENST00000539244 LAMC1P11047 1609 aa20.56■□□□□ 0.88
SS18-204ENST00000539244 C1orf167Q5SNV9 1468 aa20.55■□□□□ 0.88
SS18-204ENST00000539244 RPGRIP1LQ68CZ1 1315 aa20.54■□□□□ 0.88
SS18-204ENST00000539244 NUTM2BA6NNL0 878 aaPredicted RBP20.54■□□□□ 0.88
SS18-204ENST00000539244 NUTM2EB1AL46 878 aaPredicted RBP20.54■□□□□ 0.88
SS18-204ENST00000539244 RXRBP28702 533 aa20.54■□□□□ 0.88
SS18-204ENST00000539244 NUTM2AQ8IVF1 878 aaPredicted RBP20.54■□□□□ 0.88
SS18-204ENST00000539244 PNPLA6Q8IY17 1366 aa20.54■□□□□ 0.88
SS18-204ENST00000539244 AFF2P51816 1311 aa20.53■□□□□ 0.88
SS18-204ENST00000539244 ROBO2Q9HCK4 1378 aa20.52■□□□□ 0.88
SS18-204ENST00000539244 UPF1Q92900 1129 aaKnown RBP eCLIP20.52■□□□□ 0.88
SS18-204ENST00000539244 TRIM52Q96A61 297 aa20.52■□□□□ 0.88
SS18-204ENST00000539244 PPLO60437 1756 aa20.51■□□□□ 0.87
SS18-204ENST00000539244 DDX17Q92841 729 aaKnown RBP20.5■□□□□ 0.87
SS18-204ENST00000539244 SLC4A1APQ9BWU0 796 aaKnown RBP20.49■□□□□ 0.87
SS18-204ENST00000539244 SOS2Q07890 1332 aaPredicted RBP20.48■□□□□ 0.87
SS18-204ENST00000539244 C8orf37Q96NL8 207 aa20.45■□□□□ 0.86
SS18-204ENST00000539244 ORAI2Q96SN7 254 aa20.44■□□□□ 0.86
SS18-204ENST00000539244 CDC42BPGQ6DT37 1551 aa20.42■□□□□ 0.86
SS18-204ENST00000539244 RBM6P78332 1123 aaKnown RBP20.42■□□□□ 0.86
SS18-204ENST00000539244 QTRT2Q9H974 415 aaKnown RBP20.42■□□□□ 0.86
SS18-204ENST00000539244 RGS12O14924 1447 aa20.42■□□□□ 0.86
SS18-204ENST00000539244 COL22A1Q8NFW1 1626 aaPredicted RBP20.41■□□□□ 0.86
SS18-204ENST00000539244 TECPR2O15040 1411 aa20.4■□□□□ 0.86
SS18-204ENST00000539244 SPATA31E1Q6ZUB1 1445 aa20.39■□□□□ 0.85
SS18-204ENST00000539244 IFT172Q9UG01 1749 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms