RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 FAM117AQ9C073 453 aa8.97□□□□□ -0.97
CD44-236ENST00000533222 FAM98CQ17RN3 349 aaKnown RBP8.96□□□□□ -0.98
CD44-236ENST00000533222 SWT1Q5T5J6 900 aaKnown RBP8.96□□□□□ -0.98
CD44-236ENST00000533222 NBPF3Q9H094 633 aa8.96□□□□□ -0.98
CD44-236ENST00000533222 FAM217BQ9NTX9 383 aaPredicted RBP8.96□□□□□ -0.98
CD44-236ENST00000533222 PLEKHG3A1L390 1219 aa8.94□□□□□ -0.98
CD44-236ENST00000533222 SSTR3P32745 418 aaPredicted RBP8.94□□□□□ -0.98
CD44-236ENST00000533222 SAMD7Q7Z3H4 446 aa8.94□□□□□ -0.98
CD44-236ENST00000533222 MRPL50Q8N5N7 158 aaKnown RBP8.94□□□□□ -0.98
CD44-236ENST00000533222 IL27Q8NEV9 243 aa8.94□□□□□ -0.98
CD44-236ENST00000533222 ZFRQ96KR1 1074 aaKnown RBP8.93□□□□□ -0.98
CD44-236ENST00000533222 DDX11L8A8MPP1 907 aa8.92□□□□□ -0.98
CD44-236ENST00000533222 LAPTM4BQ86VI4 370 aa8.92□□□□□ -0.98
CD44-236ENST00000533222 RNF40O75150 1001 aa8.9□□□□□ -0.98
CD44-236ENST00000533222 SLC10A3P09131 477 aa8.9□□□□□ -0.98
CD44-236ENST00000533222 CD46P15529 392 aa8.89□□□□□ -0.99
CD44-236ENST00000533222 BCAMP50895 628 aa8.89□□□□□ -0.99
CD44-236ENST00000533222 BEGAINQ9BUH8 593 aa8.89□□□□□ -0.99
CD44-236ENST00000533222 RDH13Q8NBN7 331 aa8.88□□□□□ -0.99
CD44-236ENST00000533222 WNT2BQ93097 391 aa8.86□□□□□ -0.99
CD44-236ENST00000533222 STAC3Q96MF2 364 aa8.86□□□□□ -0.99
CD44-236ENST00000533222 GOLGA8CPA6NN73 597 aa8.85□□□□□ -0.99
CD44-236ENST00000533222 TMEM132AQ24JP5 1023 aa8.85□□□□□ -0.99
CD44-236ENST00000533222 SULF1Q8IWU6 871 aa8.85□□□□□ -0.99
CD44-236ENST00000533222 ANKK1Q8NFD2 765 aa8.85□□□□□ -0.99
CD44-236ENST00000533222 DDRGK1Q96HY6 314 aa8.85□□□□□ -0.99
CD44-236ENST00000533222 LRCH3Q96II8 777 aa8.85□□□□□ -0.99
CD44-236ENST00000533222 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.85□□□□□ -0.99
CD44-236ENST00000533222 SLF2Q8IX21 1173 aa8.84□□□□□ -0.99
CD44-236ENST00000533222 KCTD12Q96CX2 325 aaKnown RBP8.84□□□□□ -0.99
CD44-236ENST00000533222 SOWAHBA6NEL2 793 aa8.83□□□□□ -1
CD44-236ENST00000533222 CFHP08603 1231 aa8.82□□□□□ -1
CD44-236ENST00000533222 HDGFP51858 240 aaKnown RBP8.82□□□□□ -1
CD44-236ENST00000533222 TBC1D2Q9BYX2 928 aa8.82□□□□□ -1
CD44-236ENST00000533222 HPS5Q9UPZ3 1129 aa8.82□□□□□ -1
CD44-236ENST00000533222 GCGRP47871 477 aa8.81□□□□□ -1
CD44-236ENST00000533222 THSD4Q6ZMP0 1018 aa8.81□□□□□ -1
CD44-236ENST00000533222 SPIRE2Q8WWL2 714 aa8.81□□□□□ -1
CD44-236ENST00000533222 HLA-CQ95604 372 aa8.81□□□□□ -1
CD44-236ENST00000533222 MYSM1Q5VVJ2 828 aa8.8□□□□□ -1
CD44-236ENST00000533222 WBP1LQ9NX94 342 aa8.79□□□□□ -1
CD44-236ENST00000533222 NDUFV2P19404 249 aa8.78□□□□□ -1
CD44-236ENST00000533222 APLP1P51693 650 aa8.78□□□□□ -1
CD44-236ENST00000533222 GUCA2AQ02747 115 aa8.78□□□□□ -1
CD44-236ENST00000533222 SPNS2Q8IVW8 549 aa8.78□□□□□ -1
CD44-236ENST00000533222 POLR3EQ9NVU0 708 aa8.78□□□□□ -1
CD44-236ENST00000533222 MYT1LQ9UL68 1186 aa8.78□□□□□ -1
CD44-236ENST00000533222 MOXD2PA6NHM9 499 aa8.77□□□□□ -1.01
CD44-236ENST00000533222 KDM4AO75164 1064 aa8.77□□□□□ -1.01
CD44-236ENST00000533222 FUT2Q10981 343 aa8.77□□□□□ -1.01
CD44-236ENST00000533222 SH3D19Q5HYK7 790 aa8.77□□□□□ -1.01
CD44-236ENST00000533222 NUTM1Q86Y26 1132 aa8.77□□□□□ -1.01
CD44-236ENST00000533222 LIMD1Q9UGP4 676 aa8.77□□□□□ -1.01
CD44-236ENST00000533222 TSR3Q9UJK0 312 aaKnown RBP8.77□□□□□ -1.01
CD44-236ENST00000533222 HOXA2O43364 376 aa8.76□□□□□ -1.01
CD44-236ENST00000533222 SLC4A3P48751 1232 aa8.76□□□□□ -1.01
CD44-236ENST00000533222 PPP4CP60510 307 aa8.76□□□□□ -1.01
CD44-236ENST00000533222 FBXO31Q5XUX0 539 aaPredicted RBP8.76□□□□□ -1.01
CD44-236ENST00000533222 PROCA1Q8NCQ7 364 aaPredicted RBP8.76□□□□□ -1.01
CD44-236ENST00000533222 PTPN5P54829 565 aa8.75□□□□□ -1.01
CD44-236ENST00000533222 PUS10Q3MIT2 529 aaKnown RBP8.75□□□□□ -1.01
CD44-236ENST00000533222 RSPH4AQ5TD94 716 aa8.75□□□□□ -1.01
CD44-236ENST00000533222 CLK2P49760 499 aaKnown RBP8.74□□□□□ -1.01
CD44-236ENST00000533222 SKIV2LQ15477 1246 aaKnown RBP8.73□□□□□ -1.01
CD44-236ENST00000533222 CSPP1Q1MSJ5 1256 aa8.73□□□□□ -1.01
CD44-236ENST00000533222 RSBN1LQ6PCB5 846 aaPredicted RBP8.73□□□□□ -1.01
CD44-236ENST00000533222 PCDH10Q9P2E7 1040 aa8.73□□□□□ -1.01
CD44-236ENST00000533222 ACTN4O43707 911 aaKnown RBP8.72□□□□□ -1.01
CD44-236ENST00000533222 KMT5BQ4FZB7 885 aa8.72□□□□□ -1.01
CD44-236ENST00000533222 RIC3Q7Z5B4 369 aa8.72□□□□□ -1.01
CD44-236ENST00000533222 PCDHGC3Q9UN70 934 aa8.72□□□□□ -1.01
CD44-236ENST00000533222 PCDHB15Q9Y5E8 787 aa8.72□□□□□ -1.01
CD44-236ENST00000533222 SPTLC1O15269 473 aa8.71□□□□□ -1.02
CD44-236ENST00000533222 RNF166Q96A37 237 aaPredicted RBP8.71□□□□□ -1.02
CD44-236ENST00000533222 RSPH6AQ9H0K4 717 aa8.71□□□□□ -1.02
CD44-236ENST00000533222 GOPCQ9HD26 462 aa8.71□□□□□ -1.02
CD44-236ENST00000533222 USP46P62068 366 aa8.7□□□□□ -1.02
CD44-236ENST00000533222 QPCTQ16769 361 aa8.7□□□□□ -1.02
CD44-236ENST00000533222 PCMTD1Q96MG8 357 aaPredicted RBP8.7□□□□□ -1.02
CD44-236ENST00000533222 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.7□□□□□ -1.02
CD44-236ENST00000533222 FDX1P10109 184 aa8.69□□□□□ -1.02
CD44-236ENST00000533222 MORN1Q5T089 497 aa8.69□□□□□ -1.02
CD44-236ENST00000533222 BLOC1S3Q6QNY0 202 aa8.69□□□□□ -1.02
CD44-236ENST00000533222 CABLES1Q8TDN4 633 aa8.69□□□□□ -1.02
CD44-236ENST00000533222 ATP6V1AP38606 617 aa8.68□□□□□ -1.02
CD44-236ENST00000533222 DIXDC1Q155Q3 683 aa8.68□□□□□ -1.02
CD44-236ENST00000533222 NECTIN2Q92692 538 aa8.68□□□□□ -1.02
CD44-236ENST00000533222 SYMPKQ92797 1274 aaKnown RBP8.68□□□□□ -1.02
CD44-236ENST00000533222 ATP1B4Q9UN42 357 aaPredicted RBP8.68□□□□□ -1.02
CD44-236ENST00000533222 SLC27A5Q9Y2P5 690 aa8.68□□□□□ -1.02
CD44-236ENST00000533222 PCDHB3Q9Y5E6 796 aa8.68□□□□□ -1.02
CD44-236ENST00000533222 COPS2P61201 443 aa8.67□□□□□ -1.02
CD44-236ENST00000533222 MMRN1Q13201 1228 aa8.66□□□□□ -1.02
CD44-236ENST00000533222 GTF3C3Q9Y5Q9 886 aa8.66□□□□□ -1.02
CD44-236ENST00000533222 RNF19BQ6ZMZ0 732 aa8.65□□□□□ -1.02
CD44-236ENST00000533222 PRR14Q9BWN1 585 aa8.65□□□□□ -1.02
CD44-236ENST00000533222 TLL1O43897 1013 aa8.64□□□□□ -1.03
CD44-236ENST00000533222 LILRB3O75022 631 aa8.64□□□□□ -1.03
CD44-236ENST00000533222 HRCP23327 699 aa8.64□□□□□ -1.03
CD44-236ENST00000533222 RTL5Q5HYW3 569 aaPredicted RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms