RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 UNC13BO14795 1591 aa22.42■■□□□ 1.18
VPS28-215ENST00000531924 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.42■■□□□ 1.18
VPS28-215ENST00000531924 TMEM94Q12767 1356 aa22.41■■□□□ 1.18
VPS28-215ENST00000531924 PHF23Q9BUL5 403 aaPredicted RBP22.41■■□□□ 1.18
VPS28-215ENST00000531924 ALKQ9UM73 1620 aa22.41■■□□□ 1.18
VPS28-215ENST00000531924 RIMS2Q9UQ26 1411 aa22.4■■□□□ 1.18
VPS28-215ENST00000531924 GCC2Q8IWJ2 1684 aa22.39■■□□□ 1.18
VPS28-215ENST00000531924 RBM33Q96EV2 1170 aaKnown RBP22.38■■□□□ 1.17
VPS28-215ENST00000531924 PLEKHG1Q9ULL1 1385 aa22.38■■□□□ 1.17
VPS28-215ENST00000531924 MED1Q15648 1581 aaPredicted RBP22.37■■□□□ 1.17
VPS28-215ENST00000531924 ZFYVE9O95405 1425 aa22.36■■□□□ 1.17
VPS28-215ENST00000531924 NUTM2DQ5VT03 806 aaPredicted RBP22.35■■□□□ 1.17
VPS28-215ENST00000531924 IQGAP3Q86VI3 1631 aa22.35■■□□□ 1.17
VPS28-215ENST00000531924 TMEM131LA2VDJ0 1609 aa22.34■■□□□ 1.17
VPS28-215ENST00000531924 MSH6P52701 1360 aa22.33■■□□□ 1.17
VPS28-215ENST00000531924 NKTRP30414 1462 aaKnown RBP22.33■■□□□ 1.16
VPS28-215ENST00000531924 E9PCH4 1651 aa22.33■■□□□ 1.16
VPS28-215ENST00000531924 TBX22Q9Y458 520 aa22.32■■□□□ 1.16
VPS28-215ENST00000531924 C14orf37Q86TY3 774 aa22.31■■□□□ 1.16
VPS28-215ENST00000531924 FAM135BQ49AJ0 1406 aa22.31■■□□□ 1.16
VPS28-215ENST00000531924 XIRP1Q702N8 1843 aaKnown RBP22.29■■□□□ 1.16
VPS28-215ENST00000531924 ZNF326Q5BKZ1 582 aaKnown RBP22.28■■□□□ 1.16
VPS28-215ENST00000531924 MYO5BQ9ULV0 1848 aa22.28■■□□□ 1.16
VPS28-215ENST00000531924 NWD1Q149M9 1564 aa22.27■■□□□ 1.16
VPS28-215ENST00000531924 RRBP1Q9P2E9 1410 aaKnown RBP22.25■■□□□ 1.15
VPS28-215ENST00000531924 SLAIN2Q9P270 581 aa22.25■■□□□ 1.15
VPS28-215ENST00000531924 TRIM52Q96A61 297 aa22.23■■□□□ 1.15
VPS28-215ENST00000531924 PIK3R4Q99570 1358 aa22.22■■□□□ 1.15
VPS28-215ENST00000531924 ADAMTS13Q76LX8 1427 aa22.21■■□□□ 1.15
VPS28-215ENST00000531924 ATF3P18847 181 aa22.2■■□□□ 1.14
VPS28-215ENST00000531924 DIP2AQ14689 1571 aa22.2■■□□□ 1.14
VPS28-215ENST00000531924 AMOTL2Q9Y2J4 779 aa22.19■■□□□ 1.14
VPS28-215ENST00000531924 NCOA3Q9Y6Q9 1424 aa22.19■■□□□ 1.14
VPS28-215ENST00000531924 CHD2O14647 1828 aaKnown RBP22.19■■□□□ 1.14
VPS28-215ENST00000531924 ROBO1Q9Y6N7 1651 aa22.18■■□□□ 1.14
VPS28-215ENST00000531924 NAIPQ13075 1403 aa22.18■■□□□ 1.14
VPS28-215ENST00000531924 CADPS2Q86UW7 1296 aa22.17■■□□□ 1.14
VPS28-215ENST00000531924 C19orf44Q9H6X5 657 aa22.17■■□□□ 1.14
VPS28-215ENST00000531924 TRPM2O94759 1503 aa22.16■■□□□ 1.14
VPS28-215ENST00000531924 SPHKAPQ2M3C7 1700 aa22.16■■□□□ 1.14
VPS28-215ENST00000531924 SLC4A1APQ9BWU0 796 aaKnown RBP22.13■■□□□ 1.13
VPS28-215ENST00000531924 HFM1A2PYH4 1435 aa22.11■■□□□ 1.13
VPS28-215ENST00000531924 JCADQ9P266 1359 aa22.09■■□□□ 1.13
VPS28-215ENST00000531924 PTPRUQ92729 1446 aa22.08■■□□□ 1.13
VPS28-215ENST00000531924 VGFO15240 615 aaPredicted RBP22.07■■□□□ 1.12
VPS28-215ENST00000531924 SETBP1Q9Y6X0 1596 aa22.07■■□□□ 1.12
VPS28-215ENST00000531924 CLTCL1P53675 1640 aa22.06■■□□□ 1.12
VPS28-215ENST00000531924 PHLPP1O60346 1717 aa22.06■■□□□ 1.12
VPS28-215ENST00000531924 RGS17Q9UGC6 210 aaPredicted RBP22.06■■□□□ 1.12
VPS28-215ENST00000531924 METP08581 1390 aa22.05■■□□□ 1.12
VPS28-215ENST00000531924 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.03■■□□□ 1.12
VPS28-215ENST00000531924 NEXMIFQ5QGS0 1516 aa22.02■■□□□ 1.12
VPS28-215ENST00000531924 MEX3CQ5U5Q3 659 aaKnown RBP22.02■■□□□ 1.12
VPS28-215ENST00000531924 RPGRIP1LQ68CZ1 1315 aa22.02■■□□□ 1.12
VPS28-215ENST00000531924 NRXN3Q9Y4C0 1643 aa22.01■■□□□ 1.11
VPS28-215ENST00000531924 KIF1BO60333 1816 aa22.01■■□□□ 1.11
VPS28-215ENST00000531924 DCCP43146 1447 aa22■■□□□ 1.11
VPS28-215ENST00000531924 BRINP3Q76B58 766 aa22■■□□□ 1.11
VPS28-215ENST00000531924 SPATA31A6Q5VVP1 1343 aa21.99■■□□□ 1.11
VPS28-215ENST00000531924 XRN1Q8IZH2 1706 aaKnown RBP21.98■■□□□ 1.11
VPS28-215ENST00000531924 FOXD1Q16676 465 aa21.98■■□□□ 1.11
VPS28-215ENST00000531924 POTEAQ6S8J7 498 aa21.98■■□□□ 1.11
VPS28-215ENST00000531924 COL16A1Q07092 1604 aaPredicted RBP21.96■■□□□ 1.11
VPS28-215ENST00000531924 ADGRL3Q9HAR2 1447 aa21.94■■□□□ 1.1
VPS28-215ENST00000531924 AHDC1Q5TGY3 1603 aaPredicted RBP21.94■■□□□ 1.1
VPS28-215ENST00000531924 CCDC144AA2RUR9 1427 aa21.93■■□□□ 1.1
VPS28-215ENST00000531924 MPHOSPH9Q99550 1183 aa21.93■■□□□ 1.1
VPS28-215ENST00000531924 MST1RQ04912 1400 aa21.92■■□□□ 1.1
VPS28-215ENST00000531924 NUTM2BA6NNL0 878 aaPredicted RBP21.92■■□□□ 1.1
VPS28-215ENST00000531924 NUTM2EB1AL46 878 aaPredicted RBP21.92■■□□□ 1.1
VPS28-215ENST00000531924 RGL3Q3MIN7 710 aa21.92■■□□□ 1.1
VPS28-215ENST00000531924 NUTM2AQ8IVF1 878 aaPredicted RBP21.92■■□□□ 1.1
VPS28-215ENST00000531924 ASXL1Q8IXJ9 1541 aa21.9■■□□□ 1.1
VPS28-215ENST00000531924 ACIN1Q9UKV3 1341 aaKnown RBP21.9■■□□□ 1.1
VPS28-215ENST00000531924 LRRC59Q96AG4 307 aaKnown RBP21.9■■□□□ 1.1
VPS28-215ENST00000531924 ZNF772Q68DY9 489 aaPredicted RBP21.89■■□□□ 1.09
VPS28-215ENST00000531924 PTCH1Q13635 1447 aa21.88■■□□□ 1.09
VPS28-215ENST00000531924 ROBO2Q9HCK4 1378 aa21.87■■□□□ 1.09
VPS28-215ENST00000531924 LRP6O75581 1613 aa21.85■■□□□ 1.09
VPS28-215ENST00000531924 SETD5Q9C0A6 1442 aa21.84■■□□□ 1.09
VPS28-215ENST00000531924 DDX17Q92841 729 aaKnown RBP21.84■■□□□ 1.09
VPS28-215ENST00000531924 SHPRHQ149N8 1683 aa21.84■■□□□ 1.09
VPS28-215ENST00000531924 ANKRD30BQ9BXX2 1392 aa21.84■■□□□ 1.09
VPS28-215ENST00000531924 ADGRF5Q8IZF2 1346 aa21.83■■□□□ 1.09
VPS28-215ENST00000531924 STK26Q9P289 416 aa21.83■■□□□ 1.09
VPS28-215ENST00000531924 NALCNQ8IZF0 1738 aa21.83■■□□□ 1.08
VPS28-215ENST00000531924 C1orf167Q5SNV9 1468 aa21.83■■□□□ 1.08
VPS28-215ENST00000531924 PPLO60437 1756 aa21.82■■□□□ 1.08
VPS28-215ENST00000531924 ORAI2Q96SN7 254 aa21.8■■□□□ 1.08
VPS28-215ENST00000531924 SPATA31E1Q6ZUB1 1445 aa21.79■■□□□ 1.08
VPS28-215ENST00000531924 NHSL1Q5SYE7 1610 aa21.78■■□□□ 1.08
VPS28-215ENST00000531924 RXRBP28702 533 aa21.78■■□□□ 1.08
VPS28-215ENST00000531924 PRAG1Q86YV5 1406 aa21.78■■□□□ 1.08
VPS28-215ENST00000531924 SETD1AO15047 1707 aaKnown RBP21.77■■□□□ 1.08
VPS28-215ENST00000531924 C8orf37Q96NL8 207 aa21.77■■□□□ 1.08
VPS28-215ENST00000531924 AFF2P51816 1311 aa21.77■■□□□ 1.07
VPS28-215ENST00000531924 ESCO1Q5FWF5 840 aa21.76■■□□□ 1.07
VPS28-215ENST00000531924 TMEM132EQ6IEE7 984 aa21.76■■□□□ 1.07
VPS28-215ENST00000531924 PNPLA6Q8IY17 1366 aa21.75■■□□□ 1.07
VPS28-215ENST00000531924 ADAMTS2O95450 1211 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms