RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 UNC13BO14795 1591 aa22.37■■□□□ 1.17
CPSF1-201ENST00000526271 RPRD2Q5VT52 1461 aaKnown RBP22.35■■□□□ 1.17
CPSF1-201ENST00000526271 APLP2Q06481 763 aa22.35■■□□□ 1.17
CPSF1-201ENST00000526271 PHF23Q9BUL5 403 aaPredicted RBP22.35■■□□□ 1.17
CPSF1-201ENST00000526271 STAG3Q9UJ98 1225 aa22.35■■□□□ 1.17
CPSF1-201ENST00000526271 NKTRP30414 1462 aaKnown RBP22.34■■□□□ 1.17
CPSF1-201ENST00000526271 E9PCH4 1651 aa22.34■■□□□ 1.17
CPSF1-201ENST00000526271 PROSER2Q86WR7 435 aaPredicted RBP22.31■■□□□ 1.16
CPSF1-201ENST00000526271 SLC52A1Q9NWF4 448 aa22.31■■□□□ 1.16
CPSF1-201ENST00000526271 FAM50AQ14320 339 aaKnown RBP22.3■■□□□ 1.16
CPSF1-201ENST00000526271 RIMS2Q9UQ26 1411 aa22.3■■□□□ 1.16
CPSF1-201ENST00000526271 PLEKHG1Q9ULL1 1385 aa22.29■■□□□ 1.16
CPSF1-201ENST00000526271 ADAMTS13Q76LX8 1427 aa22.29■■□□□ 1.16
CPSF1-201ENST00000526271 POTEAQ6S8J7 498 aa22.28■■□□□ 1.16
CPSF1-201ENST00000526271 IQGAP3Q86VI3 1631 aa22.26■■□□□ 1.15
CPSF1-201ENST00000526271 COL16A1Q07092 1604 aaPredicted RBP22.24■■□□□ 1.15
CPSF1-201ENST00000526271 PHLPP1O60346 1717 aa22.24■■□□□ 1.15
CPSF1-201ENST00000526271 NUTM2DQ5VT03 806 aaPredicted RBP22.21■■□□□ 1.15
CPSF1-201ENST00000526271 PTPRUQ92729 1446 aa22.2■■□□□ 1.14
CPSF1-201ENST00000526271 NRXN3Q9Y4C0 1643 aa22.2■■□□□ 1.14
CPSF1-201ENST00000526271 SETD1AO15047 1707 aaKnown RBP22.2■■□□□ 1.14
CPSF1-201ENST00000526271 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.2■■□□□ 1.14
CPSF1-201ENST00000526271 SLAIN2Q9P270 581 aa22.19■■□□□ 1.14
CPSF1-201ENST00000526271 MSH6P52701 1360 aa22.19■■□□□ 1.14
CPSF1-201ENST00000526271 ROCK1Q13464 1354 aa22.19■■□□□ 1.14
CPSF1-201ENST00000526271 TBX22Q9Y458 520 aa22.18■■□□□ 1.14
CPSF1-201ENST00000526271 LRP6O75581 1613 aa22.17■■□□□ 1.14
CPSF1-201ENST00000526271 BCANQ96GW7 911 aa22.15■■□□□ 1.14
CPSF1-201ENST00000526271 DIP2AQ14689 1571 aa22.15■■□□□ 1.14
CPSF1-201ENST00000526271 XRN1Q8IZH2 1706 aaKnown RBP22.13■■□□□ 1.13
CPSF1-201ENST00000526271 AHDC1Q5TGY3 1603 aaPredicted RBP22.12■■□□□ 1.13
CPSF1-201ENST00000526271 NCOA3Q9Y6Q9 1424 aa22.12■■□□□ 1.13
CPSF1-201ENST00000526271 PPP1R15AO75807 674 aaPredicted RBP22.11■■□□□ 1.13
CPSF1-201ENST00000526271 CHGAP10645 457 aaKnown RBP22.11■■□□□ 1.13
CPSF1-201ENST00000526271 JCADQ9P266 1359 aa22.11■■□□□ 1.13
CPSF1-201ENST00000526271 SPHKAPQ2M3C7 1700 aa22.1■■□□□ 1.13
CPSF1-201ENST00000526271 NUP155O75694 1391 aa22.09■■□□□ 1.13
CPSF1-201ENST00000526271 PIK3R4Q99570 1358 aa22.08■■□□□ 1.12
CPSF1-201ENST00000526271 SETBP1Q9Y6X0 1596 aa22.08■■□□□ 1.12
CPSF1-201ENST00000526271 SHPRHQ149N8 1683 aa22.07■■□□□ 1.12
CPSF1-201ENST00000526271 TRPM2O94759 1503 aa22.07■■□□□ 1.12
CPSF1-201ENST00000526271 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.07■■□□□ 1.12
CPSF1-201ENST00000526271 PPARGC1BQ86YN6 1023 aaKnown RBP22.06■■□□□ 1.12
CPSF1-201ENST00000526271 AMOTL2Q9Y2J4 779 aa22.05■■□□□ 1.12
CPSF1-201ENST00000526271 CLTCL1P53675 1640 aa22.05■■□□□ 1.12
CPSF1-201ENST00000526271 ITGAEP38570 1179 aa22.03■■□□□ 1.12
CPSF1-201ENST00000526271 HDGFP51858 240 aaKnown RBP22.03■■□□□ 1.12
CPSF1-201ENST00000526271 C19orf44Q9H6X5 657 aa22.03■■□□□ 1.12
CPSF1-201ENST00000526271 METP08581 1390 aa22.02■■□□□ 1.12
CPSF1-201ENST00000526271 NEXMIFQ5QGS0 1516 aa22.01■■□□□ 1.11
CPSF1-201ENST00000526271 BRINP3Q76B58 766 aa22.01■■□□□ 1.11
CPSF1-201ENST00000526271 NHSL1Q5SYE7 1610 aa22.01■■□□□ 1.11
CPSF1-201ENST00000526271 MST1RQ04912 1400 aa22■■□□□ 1.11
CPSF1-201ENST00000526271 NALCNQ8IZF0 1738 aa21.99■■□□□ 1.11
CPSF1-201ENST00000526271 ASXL1Q8IXJ9 1541 aa21.99■■□□□ 1.11
CPSF1-201ENST00000526271 CADPS2Q86UW7 1296 aa21.98■■□□□ 1.11
CPSF1-201ENST00000526271 C14orf37Q86TY3 774 aa21.97■■□□□ 1.11
CPSF1-201ENST00000526271 SPATA31A6Q5VVP1 1343 aa21.97■■□□□ 1.11
CPSF1-201ENST00000526271 DCCP43146 1447 aa21.97■■□□□ 1.11
CPSF1-201ENST00000526271 ATF3P18847 181 aa21.94■■□□□ 1.1
CPSF1-201ENST00000526271 NAIPQ13075 1403 aa21.92■■□□□ 1.1
CPSF1-201ENST00000526271 SETD5Q9C0A6 1442 aa21.92■■□□□ 1.1
CPSF1-201ENST00000526271 DDX17Q92841 729 aaKnown RBP21.92■■□□□ 1.1
CPSF1-201ENST00000526271 RRBP1Q9P2E9 1410 aaKnown RBP21.91■■□□□ 1.1
CPSF1-201ENST00000526271 ADGRL3Q9HAR2 1447 aa21.9■■□□□ 1.1
CPSF1-201ENST00000526271 KIF1BO60333 1816 aa21.9■■□□□ 1.1
CPSF1-201ENST00000526271 LAMC1P11047 1609 aa21.88■■□□□ 1.09
CPSF1-201ENST00000526271 UPF1Q92900 1129 aaKnown RBP eCLIP21.86■■□□□ 1.09
CPSF1-201ENST00000526271 ZNF326Q5BKZ1 582 aaKnown RBP21.85■■□□□ 1.09
CPSF1-201ENST00000526271 TRIM52Q96A61 297 aa21.85■■□□□ 1.09
CPSF1-201ENST00000526271 NUTM2BA6NNL0 878 aaPredicted RBP21.84■■□□□ 1.09
CPSF1-201ENST00000526271 NUTM2EB1AL46 878 aaPredicted RBP21.84■■□□□ 1.09
CPSF1-201ENST00000526271 NUTM2AQ8IVF1 878 aaPredicted RBP21.84■■□□□ 1.09
CPSF1-201ENST00000526271 PNPLA6Q8IY17 1366 aa21.84■■□□□ 1.09
CPSF1-201ENST00000526271 ROBO2Q9HCK4 1378 aa21.84■■□□□ 1.09
CPSF1-201ENST00000526271 ZNF772Q68DY9 489 aaPredicted RBP21.83■■□□□ 1.09
CPSF1-201ENST00000526271 PPLO60437 1756 aa21.83■■□□□ 1.09
CPSF1-201ENST00000526271 MEX3CQ5U5Q3 659 aaKnown RBP21.82■■□□□ 1.08
CPSF1-201ENST00000526271 C1orf167Q5SNV9 1468 aa21.82■■□□□ 1.08
CPSF1-201ENST00000526271 AFF2P51816 1311 aa21.81■■□□□ 1.08
CPSF1-201ENST00000526271 PRAG1Q86YV5 1406 aa21.81■■□□□ 1.08
CPSF1-201ENST00000526271 PTCH1Q13635 1447 aa21.8■■□□□ 1.08
CPSF1-201ENST00000526271 CDK12Q9NYV4 1490 aaPredicted RBP21.8■■□□□ 1.08
CPSF1-201ENST00000526271 RGS12O14924 1447 aa21.78■■□□□ 1.08
CPSF1-201ENST00000526271 HFM1A2PYH4 1435 aa21.76■■□□□ 1.07
CPSF1-201ENST00000526271 ORAI2Q96SN7 254 aa21.76■■□□□ 1.07
CPSF1-201ENST00000526271 RXRBP28702 533 aa21.75■■□□□ 1.07
CPSF1-201ENST00000526271 LRRC59Q96AG4 307 aaKnown RBP21.75■■□□□ 1.07
CPSF1-201ENST00000526271 SOS2Q07890 1332 aaPredicted RBP21.73■■□□□ 1.07
CPSF1-201ENST00000526271 COL22A1Q8NFW1 1626 aaPredicted RBP21.71■■□□□ 1.07
CPSF1-201ENST00000526271 C8orf37Q96NL8 207 aa21.71■■□□□ 1.07
CPSF1-201ENST00000526271 IFT172Q9UG01 1749 aa21.71■■□□□ 1.07
CPSF1-201ENST00000526271 FOXD1Q16676 465 aa21.7■■□□□ 1.06
CPSF1-201ENST00000526271 ADGRF5Q8IZF2 1346 aa21.67■■□□□ 1.06
CPSF1-201ENST00000526271 VGFO15240 615 aaPredicted RBP21.67■■□□□ 1.06
CPSF1-201ENST00000526271 QTRT2Q9H974 415 aaKnown RBP21.67■■□□□ 1.06
CPSF1-201ENST00000526271 CDC42BPGQ6DT37 1551 aa21.66■■□□□ 1.06
CPSF1-201ENST00000526271 PXDNQ92626 1479 aa21.66■■□□□ 1.06
CPSF1-201ENST00000526271 SPATA31E1Q6ZUB1 1445 aa21.66■■□□□ 1.06
CPSF1-201ENST00000526271 ADAMTS2O95450 1211 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms